Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0345
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    26   4.8  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   6.3  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   8.4  

>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -3

Query: 689 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN--GALDEVFKKYCDKSAQ 516
           T+N+   K+  ++ ++++F  CL    +LN LK+ + +   +   A  +V  +Y  KS  
Sbjct: 40  TQNDGSKKLSSIDGSIKSFAACLH---ELNRLKSRVGDRIRDYASASKQVQNEYHQKSNH 96

Query: 515 LK 510
           L+
Sbjct: 97  LR 98


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 465 NEYANHINDAQNSTNQLIDFVCYKDGD 385
           +EY N + D + + N++++   YKD D
Sbjct: 569 DEYRNKLKDKEETYNEVMNAFQYKDND 595


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 261 SSYWRIPQWGSSVSNLKSMS*DSQSFAGSTQGRLP 365
           SS  R+  + S++S+LKS    SQ+  GST   +P
Sbjct: 379 SSLNRVASFESNISSLKSALYASQNSDGSTSNPVP 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,870,587
Number of Sequences: 5004
Number of extensions: 56871
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)