Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0345
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0875 - 23920023-23920967,23921045-23921599,23921678-239220...    31   1.2  
03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006...    29   2.9  
06_03_0570 - 22363197-22363588,22363755-22366782                       28   6.6  
03_01_0640 - 4683970-4684481,4685197-4685343,4685606-4686764,468...    28   6.6  
01_03_0085 + 12310675-12311354,12311475-12311579,12311755-123118...    28   8.7  

>12_02_0875 -
           23920023-23920967,23921045-23921599,23921678-23922083,
           23922175-23922452
          Length = 727

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -3

Query: 227 DLLYREIPRRVFHTDTRKHGGITDQVHAQRLSLPHRSAQDRLIA 96
           D   RE  RR  +   R HGG+      +RLS  H+S QD   A
Sbjct: 437 DAKLREDSRRRVNVGGRNHGGVGGGEATKRLSRGHKSMQDTTAA 480


>03_06_0476 +
           34199577-34199638,34200267-34200397,34200535-34200698,
           34201007-34201117,34201308-34201387,34201489-34201639,
           34201736-34201829,34202421-34202509,34203672-34203745,
           34203859-34204021,34204445-34204530,34205011-34205094,
           34205186-34205366,34205837-34205887
          Length = 506

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
 Frame = -3

Query: 725 FSQITAVVTSQCTKNNA---ED---KVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN 564
           FSQ T V+ +Q  + +    +D   K   V  A R++G  L GLV ++V +  + E+KP+
Sbjct: 109 FSQFTVVIATQLPERSLLKLDDICRKANIVLVAARSYG--LTGLVRISVKEHNVIESKPD 166

Query: 563 GALDEV 546
             LD++
Sbjct: 167 HFLDDL 172


>06_03_0570 - 22363197-22363588,22363755-22366782
          Length = 1139

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
 Frame = -3

Query: 725 FSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKP-NGALDE 549
           FS +  ++    ++NN   ++PE       F   L  +V LN+    +E   P NG    
Sbjct: 681 FSALRGIIQMDLSRNNLSGQIPE-------FFETLSSMVLLNLSFNNLEGPIPSNGIFQN 733

Query: 548 VFKKYCDKSAQLKAVSARCCRACVLV*ATNMRTTSMMPKTVPIN 417
             K +   + +L A+S         + A+    TS + K V ++
Sbjct: 734 ASKVFLQGNKELCAISPLLKLPLCQISASKNNHTSYIAKVVGLS 777


>03_01_0640 -
           4683970-4684481,4685197-4685343,4685606-4686764,
           4686851-4686907
          Length = 624

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 479 RTPCSTELIQLSVEHSCHSTS*KPRRVHRLAWLLQFRFSEHLNRP 613
           +T CS + + L     C S+   P R  +L W L  R   +L+RP
Sbjct: 198 KTTCSADHVMLK---KCSSSQVLPSRSRKLWWRLLLRSHRNLHRP 239


>01_03_0085 +
           12310675-12311354,12311475-12311579,12311755-12311877,
           12312206-12312376,12312472-12312601,12313003-12313058,
           12313602-12313704,12313705-12313914,12314122-12314253
          Length = 569

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 584 IEEAKPNGALDEVFKKYCDKSAQLKAVSARCC 489
           ++  +P   +   F+K+C  S  LK  SA CC
Sbjct: 395 VDYGRPANEISVPFQKFCYYSILLKLTSADCC 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,910,803
Number of Sequences: 37544
Number of extensions: 389172
Number of successful extensions: 1040
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)