Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0345
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48023| Best HMM Match : Sulfotransfer_1 (HMM E-Value=2.4e-07)       30   2.2  
SB_23457| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)                       29   2.9  
SB_56697| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)                      28   6.7  
SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)                    28   6.7  
SB_56589| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.1)            28   8.9  
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_48023| Best HMM Match : Sulfotransfer_1 (HMM E-Value=2.4e-07)
          Length = 417

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 227 DLLYREIPRRVFHTDTRKHGGITDQVHAQRLSLPHRSAQDRLIAP 93
           D +   +   +FH D R+    TD +  Q  SL HR A   L AP
Sbjct: 142 DTMVTHLLNGIFHCDFRELSYFTDFISLQYSSLSHRLASRALSAP 186


>SB_23457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 212 EIPRRVFHTDTRKHGGITDQVHAQRLSLPHRSAQDRLIAPLDFFP 78
           + PRR+F  D    G IT+ V+     + H     R+ AP+ +FP
Sbjct: 381 QTPRRLFIIDQSLEGWITNAVYTGISRVRHADQIVRVTAPVSWFP 425


>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 2119

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 141 KTLLATPLCPRQIDCTVRLLSVNTSAITKLMTFESF 34
           KTL+    CP ++ CTV L   N+  +TK+     F
Sbjct: 726 KTLMYLEGCPTELGCTVTLRGGNSFVLTKIKKIMQF 761


>SB_56697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 399 YKDGDRIALFIAEGGPECFQQKTENLKTCFLNLKQSFPTVESANNLS 259
           Y  G +I  F+A+   +C  + TENL+    N +    T E+A  LS
Sbjct: 46  YLHGFKIESFVAQNPFDCSIKCTENLRCQSFNYQSESSTSENACELS 92


>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
          Length = 1243

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 556 SAPFGLASSISVFRTFKSTSPLRQFP 633
           S PFG+ S+ S+ + F S + L++FP
Sbjct: 458 SLPFGIQSASSLVKLFLSNNKLKEFP 483


>SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)
          Length = 999

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -3

Query: 698 SQCTKNNAEDKV-PEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCDKS 522
           + CT++N  D++  E  A  +   + L   +     K   ++A P G LD+  +K C K+
Sbjct: 327 ADCTRDNTRDRIIAECNAVRQALQDLLSEYMSHAGGK---KKAVPGGPLDKAIEKMCSKT 383

Query: 521 AQLK 510
           + L+
Sbjct: 384 SGLR 387


>SB_56589| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.1)
          Length = 743

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 212 EIPRRVFHTDTRKHGGITDQVHAQRLSLPHRSAQDRLIAPLDFFPLILVPSQ 57
           + PRR+F  D    G IT+ V+     + H     R+I+P D  P  LVP++
Sbjct: 387 QTPRRLFIIDHSLEGWITNAVYTGISRVRHADQIVRVISP-DNTPGALVPTR 437


>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 632 GNCLKGLVDLNVLKTEIEE 576
           GNCLKG+V++NV    IE+
Sbjct: 277 GNCLKGIVNVNVSPNIIEQ 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,145,954
Number of Sequences: 59808
Number of extensions: 453791
Number of successful extensions: 1293
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)