Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0345
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   5.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.0  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 92  TVQSICLGQSGVARRV 139
           TVQS+C+ + G A+++
Sbjct: 28  TVQSVCMKEIGTAQQI 43


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 32  KKLSKVINFVMALVLT 79
           K+LSK INF  +L L+
Sbjct: 468 KELSKTINFTYSLALS 483


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 342 QQKTENLKTCFLNLKQSFPTVESANNLSLVKNAQKLMR 229
           +Q+T++L   F  L++  PT+ S + LS ++  +   R
Sbjct: 263 RQRTQSLNEAFAALRKIIPTLPS-DKLSKIQTLKLATR 299


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 265 LEPCEKCAKVDEMTSCIVKSLEECSTPTPANMAESL 158
           ++ CE    V  + S +V   E CS  TP  +   L
Sbjct: 414 IDTCEMFDSVSILFSDVVTFTEICSRITPMEVVSML 449


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,105
Number of Sequences: 438
Number of extensions: 3690
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)