Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0345
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15830.1 68417.m02408 expressed protein                             31   0.59 
At2g13560.1 68415.m01495 malate oxidoreductase, putative similar...    29   3.2  
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    28   5.5  
At3g25610.1 68416.m03188 haloacid dehalogenase-like hydrolase fa...    27   9.6  
At1g24610.1 68414.m03096 SET domain-containing protein low simil...    27   9.6  
At1g13210.1 68414.m01532 haloacid dehalogenase-like hydrolase fa...    27   9.6  

>At4g15830.1 68417.m02408 expressed protein
          Length = 296

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = -3

Query: 728 DFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDE 549
           +  +   ++ +Q   +   DK+PE   A R+  N L      N      EE    G+  E
Sbjct: 218 EMEEFGMILLAQMAADQLSDKLPEAREAARSMVNSLFEKFTWN------EEEDEEGSKQE 271

Query: 548 VFKKYCDKS 522
            +KK+C+K+
Sbjct: 272 AWKKFCEKN 280


>At2g13560.1 68415.m01495 malate oxidoreductase, putative similar to
           NAD-dependent malic enzyme 62 kDa isoform, mitochondrial
           precursor (EC 1.1.1.39) (NAD-ME) (SP:P37221) {Solanum
           tuberosum}
          Length = 623

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 144 RMNLISDSAMFAGVGVEHSSRDFTIQEVISSTFAHF-SQGSSYWRIPQWGSSVSNLKSMS 320
           +M ++   A  AG+GV +++R  T+  ++ +T   F S  S +W +   G      +++ 
Sbjct: 337 KMKIVVAGAGSAGIGVLNAARK-TMARMLGNTETAFDSAQSQFWVVDAQGLITEGRENID 395

Query: 321 *DSQSFAGSTQ 353
            ++Q FA  T+
Sbjct: 396 PEAQPFARKTK 406


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +3

Query: 201 SRDFTIQEVISST--FAHFSQGSSY-WRIPQWGSSVSNLKSMS*DSQSFAGSTQGRL 362
           S DF    + SST  F+ FS+      ++ +WG S  +    S  S+SF G + GRL
Sbjct: 420 SDDFDNASMDSSTSRFSSFSKKPGLIQKLKKWGKSKDDSSVQSSPSRSFYGGSPGRL 476


>At3g25610.1 68416.m03188 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Mus
           musculus [SP|P98200, SP|P70704], {Bos taurus} SP|Q29449;
           contains InterPro accession IPR005834: Haloacid
           dehalogenase-like hydrolase
          Length = 1202

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 169 AESLIKFMRKDSPCHTALPKTD 104
           A  L KF R  + CHTA+P+TD
Sbjct: 509 AAVLQKFFRLLAVCHTAIPETD 530


>At1g24610.1 68414.m03096 SET domain-containing protein low
           similarity to SP|Q43088 Ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (EC 2.1.1.127)
           {Pisum sativum}; contains Pfam profile PF00856: SET
           domain
          Length = 476

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 550 SSSAPFGLASSISVFRT 600
           S+ APFG+A+ I+VFRT
Sbjct: 392 SAVAPFGIANEIAVFRT 408


>At1g13210.1 68414.m01532 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1)
           (Chromaffin granule ATPase) from {Homo sapiens}
           SP|Q9Y2Q0, {Mus musculus} SP|P98200, {Bos taurus}
           SP|Q29449; contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase; ESTs gb|T45045 and
           gb|AA394473 come from this gene
          Length = 1203

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 169 AESLIKFMRKDSPCHTALPKTD 104
           A  L KF R  + CHTA+P+TD
Sbjct: 508 AAVLQKFFRLLAVCHTAIPETD 529


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,239,939
Number of Sequences: 28952
Number of extensions: 311970
Number of successful extensions: 926
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)