Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0344
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    25   0.85 
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   2.0  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   2.6  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 595 KRSCRTVYHISASQPKYTTLCAQ*RMLNVLIRLG 696
           KR  R VY I  S+PKY        +L+   RLG
Sbjct: 118 KRFLRGVYRIKPSKPKYDVTWDPAVVLDYFERLG 151


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 331 SGILSGNGNQYGDF 372
           S ILS N N YGDF
Sbjct: 349 SSILSPNRNYYGDF 362


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 470 TISFTADIISGVIYRYGSQSSAVFQS 547
           T+SF  +++ G++   G+  S V +S
Sbjct: 211 TVSFGTNLVGGIVRSLGTLGSRVVES 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,720
Number of Sequences: 336
Number of extensions: 4279
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)