Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0344
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    28   1.6  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    27   2.1  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    27   3.8  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   3.8  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    26   6.6  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   6.6  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    26   6.6  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   8.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.7  

>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 385 SDIRQSRHIGFHCRSVCQTGAWPLRQTFSKPITPVGPNCPYTAGVSPAL 239
           S +  S H   +  S   TGA+P   +F+KP    G + P ++ + P++
Sbjct: 14  SQLAHSLHKKANNSSSSTTGAFPQLTSFTKPTATNGVDSPTSSHIDPSV 62


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 452 CSSPKLMMSEARQYF 408
           C SP L +SEARQYF
Sbjct: 234 CDSPVLSISEARQYF 248


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 389 STPLSEGSTALPHSSSTSGMSRNIKNWTISFTAD 490
           S P    ++  PHS S S M  ++ NW   F  D
Sbjct: 72  SPPTLTNTSLSPHSFSLSDMESSMSNWLNPFAFD 105


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 413  TALPHSSSTSGMSRNIKNWTISFTADIISGVIYRYGSQSSAVFQSALGHLHPKLV 577
            T +P SSSTS  S    N TI        G++  +GS + ++  S L +L  K V
Sbjct: 1443 TKVPGSSSTSSSSTQPINSTIPINPLENHGMLNSFGSTTVSISFSVLTNLDNKEV 1497


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 428 SSSTSGMSRNIKNW--TISFTADIISGVIYRY 517
           +S+T+  S     W  T SF +DI+ GV+Y Y
Sbjct: 453 ASTTAKTSNAYLGWNCTFSFFSDIMYGVLYAY 484


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +2

Query: 434 STSGMSRNIKNWTISFTADIISGVIYRYGSQSSAVFQSALGHL 562
           +TS   +    W +SFT DI       +   S+    + +GH+
Sbjct: 610 NTSNDEKETAQWIVSFTGDIALSRYKHFSKFSARASTTEIGHV 652


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 249 LLHCSLVPFLGTTTFGNLSHNCTILNRELSTTVSFSCWNF 130
           +LHC     L    +G ++  C  L   L  +  FS W+F
Sbjct: 604 ILHCVGNEKLYNPFYGLVALKCCTLQHNLKKSFQFSLWDF 643


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 497 SGVIYRYGSQSSAVFQSALGHLHPKLVQ*LRPGRGAVVPSITSRH 631
           SG + R GS+SSAV  S   +L+  +     PG      +++S H
Sbjct: 366 SGNLSRTGSESSAVSLSDTTNLNTPISDIPSPGSSTTCSNLSSPH 410


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 356 TNMATLTNV*ASTPLSEGSTALPHSSSTSGMS 451
           T+ +  T+  ASTP+   ST+   S+ST+G S
Sbjct: 73  TSTSCTTDTSASTPIITESTSSTSSASTTGSS 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,269,245
Number of Sequences: 5004
Number of extensions: 71358
Number of successful extensions: 225
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)