Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0344
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 33 0.32
11_06_0387 + 23038490-23038662,23039246-23039303,23039471-230395... 31 0.74
04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,644... 31 0.74
11_01_0196 - 1547373-1549859 29 3.9
09_04_0078 + 14379720-14379786,14379903-14379974,14381093-143814... 29 3.9
11_06_0182 + 20997071-20997832,20998010-20998150 29 5.2
03_06_0487 + 34274638-34275324 29 5.2
06_03_0208 - 17941468-17941507,17942073-17942148,17943442-179435... 28 6.9
10_07_0130 + 13241085-13241151,13241268-13241339,13242458-132428... 28 9.1
>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 32.7 bits (71), Expect = 0.32
Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 3/132 (2%)
Frame = +3
Query: 240 SAGET-PAVYGQFGPTGVMGFENV*RNGQAPVWHTERQWKPI--WRL*RMSEHRRRCPRE 410
SAG + PA Y + G G G + + APV + WK + W +S +R R
Sbjct: 1067 SAGASRPAAYQKRGTGGRRGRKRSMASESAPVTDDDNSWKEVNWWSGGNVS--KRILQRG 1124
Query: 411 VLPCLTHHQLRG*AEI*KIGLSHSQRTLYQE*YTDMGHRVPRYSSLLWGICIPSSCSSFD 590
LP LT I K ++ ++ Y + + R L W C+ S SS
Sbjct: 1125 ALPILT---------IRKAARQGGKKRMFSVSYHEGSNFPRRTRQLAWRACVGLSQSSSQ 1175
Query: 591 LEEELSYRLSHL 626
L ++ Y SH+
Sbjct: 1176 LALQVRYLDSHI 1187
>11_06_0387 +
23038490-23038662,23039246-23039303,23039471-23039551,
23039640-23039675,23039821-23040060,23040155-23040293,
23041417-23041889
Length = 399
Score = 31.5 bits (68), Expect = 0.74
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +3
Query: 546 LLWGICIPSSCSSFDLEEELSYRLSHLGITAKVHNTMCTVKNVKR 680
+L+ +C+P + +D + S H+ A+ H T +K ++R
Sbjct: 352 MLYDVCVPKNVEGWDFKPSASINGRHINSIARQHGTFNPIKCIRR 396
>04_01_0490 -
6440176-6440448,6440785-6441074,6441156-6441304,
6441432-6441890,6441973-6442269,6442604-6443502,
6443793-6443827,6443984-6444078,6444184-6444247,
6446099-6446175,6446330-6446514
Length = 940
Score = 31.5 bits (68), Expect = 0.74
Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -2
Query: 570 LGCRCPKADWNTAE-LCDPYLY-ITPD 496
LG CP+A NT LCDPY Y ITP+
Sbjct: 91 LGSYCPRATVNTTTGLCDPYKYQITPN 117
>11_01_0196 - 1547373-1549859
Length = 828
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 541 PVCFGASASQARAVASTWKRSCRTVYHISASQP 639
PVC A + R AS W R CR + I +P
Sbjct: 312 PVCVCAPGHE-RVDASDWSRGCRPTFRIECGRP 343
>09_04_0078 +
14379720-14379786,14379903-14379974,14381093-14381497,
14382835-14382911,14383016-14383135,14383227-14383997,
14384933-14385146,14385269-14385735
Length = 730
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 361 YGDFDECLSIDAAVRGKYCLASLIINFGDEQKYKKLDYLIHSGHYIRSNIQIWV 522
+G ECLS D+ +RG + + S+I GD K + + R+N++ W+
Sbjct: 456 HGCLVECLSQDSGIRGCWFIGSVIRRCGDRIKVRYQH--LQDPETPRANLEEWL 507
>11_06_0182 + 20997071-20997832,20998010-20998150
Length = 300
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 35 LFTSAVLSRDCIELTISDKRIITETILNSTILKFQHENDTVVESSRFNIVQLW--ERFPK 208
L +A L + ++D ++ + ++ + F +EN +VE+S N++Q+W + PK
Sbjct: 163 LLYAATLLGEIHMFDLTDPKVAPKIVMGK-VKDFLYENIYIVEASCGNLLQIWRSDDLPK 221
Query: 209 VVVP 220
VP
Sbjct: 222 WDVP 225
>03_06_0487 + 34274638-34275324
Length = 228
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 400 QRRRCSDIRQSRHIGFHCRSVCQTGAWPLRQ-TFSKPITPVGPNCPYTAGVSPALFTSTV 224
++R +++S+HI F R+ C T P+R+ S T + P + L T T+
Sbjct: 40 EKRPSKRMKRSQHIEFDRRTKCSTLTLPIRKLQVSTEKTEEESSEPIVMSLHRLLSTQTL 99
Query: 223 PRHN 212
P N
Sbjct: 100 PMQN 103
>06_03_0208 -
17941468-17941507,17942073-17942148,17943442-17943514,
17944023-17944106,17945335-17945481,17945839-17945863,
17945966-17946420
Length = 299
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 466 LDYLIHS-GHYIRSNIQIWVTEFRGIPVCFGASASQARAVASTW 594
L +++H GH + + ++ RG C GA AS A A+A+++
Sbjct: 16 LTWMLHDFGHPVLAELRRLRGSCRGASYCLGARASSASALAASY 59
>10_07_0130 +
13241085-13241151,13241268-13241339,13242458-13242862,
13243057-13243112,13244116-13244274,13244379-13244498,
13244591-13245361,13245902-13246078,13246192-13246669,
13247502-13248094
Length = 965
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 376 ECLSIDAAVRGKYCLASLIINFGDEQKYKKLDYLIHSGHYIRSNIQIWV 522
ECLS D+ +RG + + S+I GD K + + R+N++ W+
Sbjct: 507 ECLSQDSGIRGCWFIGSVIRRRGDRIKVRYQH--LQDPETPRANLEEWL 553
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,752,413
Number of Sequences: 37544
Number of extensions: 483827
Number of successful extensions: 1357
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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