Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0344
(748 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45) 40 0.002
SB_9781| Best HMM Match : MarC (HMM E-Value=8.8) 37 0.020
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_3535| Best HMM Match : WD40 (HMM E-Value=3.2) 30 2.3
SB_19120| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_22415| Best HMM Match : TT_ORF2 (HMM E-Value=3.7) 29 4.0
SB_16662| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13) 28 7.0
SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)
Length = 936
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/43 (51%), Positives = 26/43 (60%)
Frame = +1
Query: 310 DATAKPPSGILSGNGNQYGDFDECLSIDAAVRGKYCLASLIIN 438
DA KP SGI++G G +DECLSI A YCLA+L N
Sbjct: 151 DAAGKPASGIMAGALAWIGSYDECLSIPDA---HYCLANLAPN 190
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 531 PRYSSLLWGICIPSSCSSFDL 593
P + L WG+C+P CS+ D+
Sbjct: 199 PFGAELKWGLCVPKGCSADDV 219
>SB_9781| Best HMM Match : MarC (HMM E-Value=8.8)
Length = 430
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 480 SQRTLYQE*YTDMGHRVPRYSSLLWGICIPSSCSSFDLEEELSYRLSHLGITAK 641
++R + +T++ + P ++ WG+CIP C+ DLE + L L IT+K
Sbjct: 144 TKRQFFVRYFTNL--KTPTVPTVRWGLCIPKQCTEEDLEIGIEAILQALNITSK 195
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 347 AMETNMATLTNV*ASTPLSEGSTALPHSSSTSG 445
A ET MAT T V + T ++ GSTA P ++ G
Sbjct: 3496 APETTMATETTVASETTVTPGSTAAPETTVAPG 3528
>SB_3535| Best HMM Match : WD40 (HMM E-Value=3.2)
Length = 231
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +1
Query: 502 SNIQIWVTEFRGIPVCFGASASQARAVASTWKRSCRTVYHISASQPKYTTLCAQ*RMLNV 681
+N QI+V + + + + + + + W R + I+ S + +C
Sbjct: 29 ANRQIYVYDTENMRLSEWSKTAMREGLPTDWMYHHRKITSITFSPKNHELMCLGTHRDFT 88
Query: 682 LIRLGKPCP 708
L+ LGKPCP
Sbjct: 89 LVDLGKPCP 97
>SB_19120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +2
Query: 458 IKNWTISFTADIISGVIYRYGSQSSAVFQSALGHLHPKLVQ*LRPGRGAVVPSITSRHHS 637
+K + I ++ D+ + +YR G + + +S G+LH Q ++ H
Sbjct: 348 MKTYNIGYSTDLSTWHVYREGGNAQSPHKSTSGYLHE--CQSTLGYLHECQSTLGYLHEC 405
Query: 638 QSTQHYVHSEEC*TSL 685
QST Y+H EC ++L
Sbjct: 406 QSTSGYLH--ECQSTL 419
>SB_22415| Best HMM Match : TT_ORF2 (HMM E-Value=3.7)
Length = 483
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 446 SPKLMMSEARQYFPRTAASMLRHSSKSPYWFPLPLSMPDGG 324
SP L + + FP+ + ++ P FPLPLS+ D G
Sbjct: 147 SPSLPKFDRLRAFPKDDPFFQKSTAAFPKIFPLPLSLSDSG 187
>SB_16662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 98 ITETILNSTILKFQHENDTVVESSRFNIVQLWERFPKVVV 217
+T L TIL+F+ +T + + FNI++ + RFP ++
Sbjct: 35 LTTKSLEMTILEFKIFKETSNKHTAFNILKYFSRFPLKII 74
>SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13)
Length = 557
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 528 VPRYSSLLWGICIPSSCSSFDLEEELSYRLSHLGITAKVH 647
V +Y +L G PS S+ + ++ R SHL I AKV+
Sbjct: 87 VDQYQLMLSGPVSPSQASARRQQHRMTGRQSHLNIEAKVY 126
>SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 29 LTLFTSAVLSRDCIELTISDKRIITETILNSTILKFQHENDTVVESS-RFN 178
+ L TS + D L ++D + T T+LN F H + + S+ RF+
Sbjct: 233 VALATSTTVKTDVSTLVLTDIKTTTSTVLNVARTTFTHTSTEIASSTHRFD 283
>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 349 NGNQYGDFDECLSIDAAVRGKYCLASLIINFGD 447
N YGD+D ++ V+G Y ++I+ FGD
Sbjct: 856 NHLSYGDYDVLCMLEKLVQGGYHNNTMIVLFGD 888
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,078,802
Number of Sequences: 59808
Number of extensions: 545749
Number of successful extensions: 1677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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