Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0344
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 458 YFCSSPKLMMSEARQYFPRTAAS 390
           +F +SP+L   +  +YF RT  S
Sbjct: 241 FFSTSPELSNKQRFEYFTRTIPS 263


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 449 SSPKLMMSEARQYFPRTAASMLRHSSKSPYWFPLP 345
           S  K++ S +R+Y  R ++S++   S S    P P
Sbjct: 12  SQRKIIRSRSRRYSKRFSSSIVDRRSPSSSRSPSP 46


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 647 QHYVHSEEC*TSLFVWESLVHIFLLSDTA 733
           +H+ +SEE   ++ +W+  + +  L D A
Sbjct: 209 KHFTNSEEAPGNMGLWDQALALRWLRDNA 237


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 647 QHYVHSEEC*TSLFVWESLVHIFLLSDTA 733
           +H+ +SEE   ++ +W+  + +  L D A
Sbjct: 209 KHFTNSEEAPGNMGLWDQALALRWLRDNA 237


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 458 YFCSSPKLMMSEARQYFPRTAASMLRHSSKSP 363
           YFC   KL   +     P++ +S    S++SP
Sbjct: 428 YFCLDGKLPHDDQPPLSPQSDSSSSSRSAESP 459


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,689
Number of Sequences: 438
Number of extensions: 5002
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)