Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0343
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    28   1.7  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.2  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    25   9.2  

>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 732 WPVHGC-GSINFVIKISHMFYMNYNYLCTFIRDG*WGNDVPVLIIDK*N 589
           +P   C   I+ +++++H+F  N    C  +    W +++P L+  K N
Sbjct: 300 YPFFRCEDDIDAIVELAHIFGRNGMSNCALLHGQIWSDNIPTLLDQKHN 348


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -3

Query: 120 SICLKIFILYKYN-FVFIY 67
           S CLK+F  Y+Y+ F+F+Y
Sbjct: 202 SECLKLFFRYQYSQFLFVY 220


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 205 KLNNSLYYSFPDISWQDTCKWNHNSLITNVRNQGRE 312
           + N  L+YS P +  + +  W +N    ++RNQ +E
Sbjct: 98  RFNGKLFYSPPRLFKEKSALWMYNFHGKSLRNQYKE 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,864
Number of Sequences: 5004
Number of extensions: 57175
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)