Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0343
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1175 - 10094144-10094387,10094573-10094730,10094851-100950...    29   5.4  

>06_01_1175 -
           10094144-10094387,10094573-10094730,10094851-10095055,
           10095184-10095473,10095605-10095770,10095872-10095960,
           10096060-10096127,10097185-10097473
          Length = 502

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 196 VPYKLNNSLYYSFPDISWQDTCKWNHNSLITNVR 297
           V  ++ + +Y+S P ISW D   + HN ++  +R
Sbjct: 178 VKRRVEHGMYHSMPPISWSD-ISYYHNQILPLIR 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,761,908
Number of Sequences: 37544
Number of extensions: 279101
Number of successful extensions: 378
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)