Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0343
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z70782-2|CAA94839.1|  387|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    28   6.5  

>Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical
           protein T19B10.3 protein.
          Length = 653

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 235 PDISWQDTCKWNHNSLITNVRNQGREFTRKNP 330
           P  +W DT  W     I N RN GR +  K P
Sbjct: 573 PTDTWLDTTGWGKGIAIVNGRNFGRYWPTKGP 604


>Z70782-2|CAA94839.1|  387|Caenorhabditis elegans Hypothetical
           protein R04B5.3 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +1

Query: 265 WNHNSLITNVRNQGREFTRKNPANFCL*NAAVYLLYYIERDYHPMTVSTTIILRNVCL 438
           W+H   I     + RE ++K  +N    N  +Y L YI+++ +P+   T ++    CL
Sbjct: 299 WDHG--IVGQTEECREISKKMKSNVT--NEYIYYLKYIQKNENPVCQLTMLVSILTCL 352


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 756 SCILI*QPWPVHGCGSINFVIKISHMFYMNYNYL 655
           SCI +     +H CG I   + IS +F+ N+ YL
Sbjct: 5   SCITVTLIIALHFCGIITTFLPISSIFHDNFEYL 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,298,529
Number of Sequences: 27780
Number of extensions: 308039
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)