Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0342
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   2.2  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   2.9  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    26   6.7  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.7  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    26   6.7  

>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = -3

Query: 667 THEHRPDPAPAHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLETCCGYG 488
           TH  RP P  + PL V+++  P   AN  +    P      P       + +  T  G  
Sbjct: 591 THSSRPTPNASSPLDVRSKQKP-SSANSNAPTPAPTVNTTNPE-----SSTNEATSVGPA 644

Query: 487 YEPARHLHVHPS-PEFSRSAESIRTPP 410
            EP++  +VH S  E     +S ++ P
Sbjct: 645 LEPSQGANVHKSDSELDNQNQSGKSNP 671


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 498 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 370
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 193 KGNPVPIPEPGSGTVSIIVPSL*KRVFD 276
           K NPV I EPG G  S I   L +R+ D
Sbjct: 202 KNNPVLIGEPGVGKTS-IAEGLARRIID 228


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 406 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 269
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = -2

Query: 734 HIKYIQFLRPHYIKILTR*NEHNART---STRPGTGASASRPNP---TRPGPQSQSLFRS 573
           H K I FL    I  L    E +A        P + ASAS PNP   TR G +      +
Sbjct: 219 HGKEIPFLGESEIPKLLANVEPSANAHGLGIEPASKASASSPNPQSGTRLGTKESVAPNN 278

Query: 572 YGSNLPTSL 546
            GS+ P SL
Sbjct: 279 EGSSNPPSL 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,276,484
Number of Sequences: 5004
Number of extensions: 72688
Number of successful extensions: 200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)