Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0342
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 32 0.43
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 32 0.57
10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297 31 0.76
06_01_0350 + 2534422-2535615 31 1.3
05_01_0510 - 4253902-4254032,4254121-4255225 30 1.7
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 3.1
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 29 4.0
01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702... 29 4.0
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 5.3
03_05_0883 + 28483429-28484385,28485090-28485398 29 5.3
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 28 7.1
11_06_0610 - 25449085-25453284 28 7.1
12_02_0877 - 23946449-23948284 28 9.3
05_04_0145 - 18391112-18392461,18392545-18392637 28 9.3
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -3
Query: 547 LPTLFYRLEALHLETCCGYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLP 371
+P+L +E HL G+ P+ H P P+ S R PP R S RSE P
Sbjct: 12 MPSLLADVEVSHL---AGFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFP 68
Query: 370 SI 365
+
Sbjct: 69 PL 70
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 31.9 bits (69), Expect = 0.57
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = -2
Query: 671 HNARTSTRPGTGASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP*DLLR 495
H RT PG G+S+ P P ++ S RS G + P S + + DLLR
Sbjct: 15 HVGRTPETPGRGSSSGSPAPGGSASKAVSFARSLGVHFPRSSAQVQPARAPPEVADLLR 73
>10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297
Length = 311
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -2
Query: 668 NARTSTRPGTGASASRPNPTRPGP 597
+A T+TR +GA+ +RP PTRP P
Sbjct: 279 SAATTTRNNSGAAPARPVPTRPWP 302
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 359 PWNSNAQAEKKTLPGPLGGVFRP 291
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>05_01_0510 - 4253902-4254032,4254121-4255225
Length = 411
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = -3
Query: 676 TNITHEHRPDPAPAHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLF----YRLEALHL 509
T T P P+PA +T HA A + VT L PT+ + LE + +
Sbjct: 55 TPTTARSSPKPSPASSTAARTNHAAPKLARHFVNVTGRGRPLICPTISFLPRFDLEGMRM 114
Query: 508 ETCCG 494
CCG
Sbjct: 115 VDCCG 119
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 634 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 545
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 634 HPLPVQTRHAPVLRANP 584
H +PVQ H+PVL+ NP
Sbjct: 340 HSVPVQKNHSPVLKTNP 356
>01_06_1827 +
40169001-40169263,40169358-40169472,40170090-40170201,
40170556-40170623,40170798-40170852,40170948-40171027,
40171811-40171924,40172178-40172296,40173064-40173181,
40173264-40173394,40173535-40173688,40173922-40174017
Length = 474
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Frame = -3
Query: 655 RPDPAPAHPLPVQTRHAPVLRANPYSEVT----DPICRLPL-PTLFYRLEALHLETCCGY 491
RP P PA P P R PV+ P + PI L P+ LE +H +C G
Sbjct: 33 RPPPPPAPPPPPPPRLEPVVVVAPSTTTATATLPPIITPTLSPSTSTCLECVHFNSCSGC 92
Query: 490 GYE 482
+E
Sbjct: 93 THE 95
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 628 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 515
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>03_05_0883 + 28483429-28484385,28485090-28485398
Length = 421
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -3
Query: 361 FHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKERERLLKRFR 227
FHG R + +PD A S G G + ERE + R+R
Sbjct: 302 FHGERPRFDPSESWPDFPAGSRGGLGAAVTAVTGGEREARVSRYR 346
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 656 STRPGTGASASRPNPTRPGPQSQSLFRSY 570
+TRPG A+ N T GPQ +FR +
Sbjct: 904 TTRPGKKLMATTANRTSKGPQDNRVFREH 932
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 7.1
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Frame = -3
Query: 664 HEHRPDPAPAHPLPVQTRHAPVL--RANPYSEVTDPICRLPLPTLFYRLEALHLETCCGY 491
H P P P P +T+ P L +P E P P + E+ T
Sbjct: 863 HVSSPPPPEKSPPPPETKSPPTLTPEISPPPEGKSPPSHTPESSSPPSKESEPPPTPTPK 922
Query: 490 GYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEP 380
P+ +V PSP S ++PP S S P
Sbjct: 923 SSPPSHEEYVPPSPAKSTPPPEEKSPPSHTPESSSPP 959
>12_02_0877 - 23946449-23948284
Length = 611
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 656 STRPGTGASASRPNPTRPGPQSQSLFRSYGSNLPTSL 546
ST + ASA RP PT P + L + ++LP L
Sbjct: 4 STAASSSASAVRPPPTWGAPSQRRLVEQHLASLPRGL 40
>05_04_0145 - 18391112-18392461,18392545-18392637
Length = 480
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 661 EHRPDPAPAHPLPVQTRHAPVLRANPYS 578
+H AP+ P P + RHAP A YS
Sbjct: 42 DHGSSNAPSPPTPRRARHAPATTAVTYS 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,363,696
Number of Sequences: 37544
Number of extensions: 537767
Number of successful extensions: 1985
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1984
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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