Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0342
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    29   4.8  
AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical...    28   6.3  
AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...    28   6.3  

>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 659 TSTRPGTGASASRPNPTRPGPQSQSLFRSYGSNLPTSLT 543
           TST P T  S + P P+ P     S      SNL ++LT
Sbjct: 297 TSTVPSTTTSTTTPKPSSPSTAEASTTPVLTSNLTSALT 335


>AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical
           protein C31B8.1 protein.
          Length = 229

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 641 TGASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP 510
           T A     +P +  P +Q LF S+G  LP      I +   SSP
Sbjct: 11  TMAITRSKSPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSP 54


>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = -3

Query: 667 THEHRPDPAPA---HPLPVQTRHAPVLRANP 584
           +HEH P PAPA    P PVQ       +A P
Sbjct: 330 SHEHSPSPAPAPVSSPTPVQQYQQSYSQAQP 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,340,225
Number of Sequences: 27780
Number of extensions: 425107
Number of successful extensions: 1383
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)