Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0342
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.77 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   4.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   7.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 301  SSGHFGLPRRTLVFKERERLLKRFRCR 221
            +  ++G+P  TL +K +ER L R R R
Sbjct: 1065 AGSYYGVPHSTLEYKVKERHLMRPRKR 1091


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 516 FTLRPAADMGTNRRDISTYIPHLNFQGPQRV 424
           FTLRPAA + T+ RD  + +    FQ  Q +
Sbjct: 293 FTLRPAAGLLTS-RDFLSSLAFRVFQSTQYI 322


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 237 FNNRSLSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEG 374
           +NN S    TS   G P+  +  +  +G+ FL  L+  V  +P+ G
Sbjct: 8   YNNVSPLQCTSPFLGGPQLTDVCSASNGELFLALLNFFVATSPVIG 53


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 632 MRRCRVWSMFVRYVRFNELVF 694
           M RC +W++ V  +  N  +F
Sbjct: 2   MLRCNIWTLAVNVLFVNSFLF 22


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 632 MRRCRVWSMFVRYVRFNELVF 694
           M RC +W++ V  +  N  +F
Sbjct: 2   MLRCNIWTLAVNVLFVNSFLF 22


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 632 MRRCRVWSMFVRYVRFNELVF 694
           M RC +W++ V  +  N  +F
Sbjct: 2   MLRCNIWTLAVNVLFVNSFLF 22


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 319 PDLSAASSGHFGLPRRTLVFK 257
           PDL+  S G  GLP   L  +
Sbjct: 336 PDLAGTSQGSAGLPSAILAMR 356


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 388 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 305
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 365 RIPWNSNAQAEKKTLPGPLGGVFRPLWVTPSNTRF*REGTI 243
           +IPW+ N +A  K   G  G      W+    T+   EG I
Sbjct: 334 QIPWDKNVEALAKWANGQTGFP----WIDAIMTQLREEGWI 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,149
Number of Sequences: 438
Number of extensions: 6572
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)