Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0342
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa...    29   3.4  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   4.5  
At5g42370.1 68418.m05159 expressed protein                             29   4.5  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    29   4.5  
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa...    28   5.9  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   5.9  
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family...    28   7.8  
At1g50520.1 68414.m05667 cytochrome P450 family protein similar ...    28   7.8  
At1g21020.1 68414.m02630 hypothetical protein similar to At3g265...    28   7.8  

>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
           family protein low similarity to phosphatidylinositol
           4-kinase type-II beta [Homo sapiens] GI:20159767;
           contains Pfam profile PF00454: Phosphatidylinositol 3-
           and 4-kinase
          Length = 650

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -1

Query: 357 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKRGNDY*NGSAAGFRN 211
           MEL+RS    ++  T +RRLQ  L +P E S L  G+       +  RN
Sbjct: 60  MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVLTNDLSAVRN 104


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 435 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 301
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 374 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 264
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 405 ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 506
           I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
           family protein low similarity to phosphatidylinositol
           4-kinase type-II beta [Homo sapiens] GI:20159767;
           contains Pfam profile PF00454: Phosphatidylinositol 3-
           and 4-kinase
          Length = 530

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -1

Query: 357 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKRGN 247
           MEL+RS    ++  T +RRLQ  L +P E S L  G+
Sbjct: 60  MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGD 92


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 430 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 332
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
           protein similar to Mrs16p (GI:2737884) [Saccharomyces
           cerevisiae]; weak similarity to ataxin-2 related protein
           (GI:1679686) [Homo sapiens]
          Length = 595

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 668 NARTSTRPGTGASASRPNPTRPGPQSQS 585
           +++T +    G SASR + +RPGP + S
Sbjct: 419 SSKTKSESSFGQSASRSSESRPGPSTSS 446


>At1g50520.1 68414.m05667 cytochrome P450 family protein similar to
           CYTOCHROME P450 93A3 GB:O81973 from [Glycine max]
          Length = 533

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -3

Query: 289 FGLPRRTLVFKERERLLKRFRCRVPE*EPDSLSLKGRYFSLFLKIIKKH 143
           F L ++ L+     RLLK+F   + E E   + +  RY  L  KIIK+H
Sbjct: 224 FSLVKKVLIANTVGRLLKKFGISLFEKE--IMEVSQRYDELLEKIIKEH 270


>At1g21020.1 68414.m02630 hypothetical protein similar to At3g26530,
           At1g08760, At1g08740, At2g29240, At1g35650
          Length = 751

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -2

Query: 614 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSS 513
           PTRPG +S SL R  G+N PT+ T +  +   SS
Sbjct: 499 PTRPGLRS-SLKRKRGNNGPTAATILTPAVDNSS 531


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,458,849
Number of Sequences: 28952
Number of extensions: 405685
Number of successful extensions: 1247
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)