Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0341
(327 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 29 0.18
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 28 0.31
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 25 2.2
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 25 2.9
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 25 3.8
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 24 5.1
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 24 5.1
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 24 5.1
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 23 8.8
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 29.1 bits (62), Expect = 0.18
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 158 MKENYSPIYLTFLTIHQIKRNYNXLIRKSKRTLTMTLATVFTYSHEILL 12
+KE + I L + I R + LIR+ K ++ L+ V + H I L
Sbjct: 3687 LKEKHETIRLAYSESQSINRKVDELIRRYKLSIKSFLSVVVVFQHFISL 3735
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 28.3 bits (60), Expect = 0.31
Identities = 20/85 (23%), Positives = 38/85 (44%)
Frame = -2
Query: 302 PYEPTPKESEPFKSVVRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTF 123
PY+P S PF +V++ SV+H PF + ++ + + + +
Sbjct: 18 PYDPPQGSSRPFFTVLKRAFSSVLH---PFTSGLDEKASGTASKDRKSGRAGTKSLLTPE 74
Query: 122 LTIHQIKRNYNXLIRKSKRTLTMTL 48
LT H + ++ +IR S R+ T+
Sbjct: 75 LTPHYLGKS-PRIIRVSNRSHVRTI 98
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 2.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -2
Query: 299 YEPTPKESEPFKSVVRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYS 141
+EP + P SV +T+ S+AP F+++ T +S E++S
Sbjct: 263 HEPEETPASPTPSVSASTSRERSTSVAPSFITSDQAATPDVLKSEEAHVESFS 315
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 25.0 bits (52), Expect = 2.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 311 FVYPYEPTPKESEPFKSVVRTTNHSVIHSIAPFFLSTSNNLT 186
F YEP S P++++ +S + + P FL++S + T
Sbjct: 222 FDMSYEPLFCISGPYEALKEKFGNSFANGLPPVFLNSSRSFT 263
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 24.6 bits (51), Expect = 3.8
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 149 NYSPIY-LTFLTIHQI-KRNYNXLIRKSKRTLTMTLATVFTYSHEILL 12
NYS I +F++I K N L S LT L TVF +H+++L
Sbjct: 506 NYSDIIDSSFISIGTFDKSNLPTLYHGSCALLTDNLVTVFLDAHDLVL 553
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 24.2 bits (50), Expect = 5.1
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 302 PYEPTPKESEPFKSV--VRTTNHSVIHSIAPFFLSTSN 195
P TP +S P +SV + + + S+APFFL T+N
Sbjct: 86 PTSSTPLQS-PDESVNKLNSEDEEGNSSVAPFFLDTTN 122
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 24.2 bits (50), Expect = 5.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 314 VFVYPYEPTPKESEPFKSVVRTTNHSVIHSI 222
+F Y Y+ + E PF R H++IH +
Sbjct: 180 IFSYCYDASYIEKLPFAFSYRKQRHTLIHDL 210
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 24.2 bits (50), Expect = 5.1
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -2
Query: 317 FVFVY-PYEPTP---KESEPFKSVVRTTNHSVIHSIAPFFLSTSNNLTC 183
FVF + P +P K E + +++ ++H V+ + L SN+++C
Sbjct: 772 FVFKFSPSQPLSSLGKNKEKYDALLERSSHGVLPVQSKMLLYNSNHISC 820
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 23.4 bits (48), Expect = 8.8
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -2
Query: 305 YPYEPTPKESEPFKSVVRTTNHSVIHSIAPFFLSTSNNLTCSSRR 171
+ Y+ S PF S+ T S + I L+ N+ + SRR
Sbjct: 496 FSYQTPNSASPPFSSLSHTLPISALAKIGHDALNRKNHASLPSRR 540
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,289,206
Number of Sequences: 5004
Number of extensions: 24772
Number of successful extensions: 56
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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