Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0341
(327 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0239 + 2502980-2503462 27 3.5
04_03_1031 + 21850857-21851009,21852229-21852350,21852447-218528... 27 3.5
02_02_0292 - 8626488-8626703,8626812-8626977,8627445-8627644 27 3.5
11_06_0197 + 21149453-21149630,21149930-21149996,21150142-211502... 27 4.6
11_01_0705 - 5795976-5796051,5796450-5796518,5796632-5796780,579... 27 4.6
09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957 27 4.6
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 27 4.6
12_01_0090 + 717524-719080 26 8.0
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 26 8.0
>10_01_0239 + 2502980-2503462
Length = 160
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 202 VLRKNGAIEWITEWFVVRTTDLNGSDSLGVGSYG 303
+ + N I++ TE + RTT N S SLG GS+G
Sbjct: 25 IAKNNHNIKYFTEDEIKRTTS-NYSTSLGNGSFG 57
>04_03_1031 +
21850857-21851009,21852229-21852350,21852447-21852891,
21852981-21853087,21853192-21854524,21854632-21854859,
21854951-21855181,21855278-21855537,21855651-21856113
Length = 1113
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 201 STEEERGDRMDNRMVCCPNNRLEWL*LLRCRFIRIDEYKQ 320
S EE++G R++ ++ RL L + R ++DE +Q
Sbjct: 72 SQEEDQGQRLEAKLQAAEQKRLSLLAKAQNRLAKLDELRQ 111
>02_02_0292 - 8626488-8626703,8626812-8626977,8627445-8627644
Length = 193
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 293 PTPKESEPFKSVVRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKE 150
P P+++ K +N I IAP + ++NL+ S+ W+T ++
Sbjct: 46 PKPQDTRRTKRCQIMSNEYAIRVIAPNLPTKTDNLSHSTGHGWTTREK 93
>11_06_0197 +
21149453-21149630,21149930-21149996,21150142-21150244,
21150901-21150971,21151091-21151154,21151239-21151304,
21151416-21151463,21151544-21151606,21151680-21151736,
21151884-21151950,21151969-21152042,21152176-21152244,
21152323-21152414,21152782-21152860,21153233-21153398,
21153826-21153950,21154089-21154351,21154473-21154569,
21154659-21154820,21154904-21155008,21155935-21156180
Length = 753
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 269 FKSVVRTTNHSVIHSIAPFFLSTSNNLTC-SSRRSWSTMKEN 147
FK V IHSIAP L+ C S+ + W ++EN
Sbjct: 236 FKEQVGQLRQRFIHSIAPGGLAADRRGFCLSALQIWKVIREN 277
>11_01_0705 -
5795976-5796051,5796450-5796518,5796632-5796780,
5796875-5797006,5797128-5797450,5798166-5798172,
5799126-5799180,5799685-5799740,5799862-5800029,
5800912-5801097,5801269-5801419,5801515-5801743,
5802277-5802532,5802793-5802894
Length = 652
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 317 FVFVYPYEPTPKESEPFKSVVRTTNHSVIHSIAPFFLS 204
F+ VY YE K+ + FK+ V +H P+ LS
Sbjct: 424 FIRVYTYESPVKQVKRFKAHVWNITTLDVHPTEPYLLS 461
>09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957
Length = 533
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/43 (44%), Positives = 20/43 (46%)
Frame = -2
Query: 218 PFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYN 90
PF L N C S R S MKEN L+ L QIK N N
Sbjct: 409 PFNLDALENEKCLSMRFLSAMKEN----KLSDLLDDQIKNNEN 447
>06_03_0783 - 24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 154 FMVDQDLLEEHVRLFEVLRKNGAIEWITEWFVVRTTDLNGSDS 282
F D+ + + EVLR+N IEW + ++ TD S S
Sbjct: 1166 FYADKSMEDTEDIAEEVLRENDMIEWSIQTSLLHPTDSAASSS 1208
>12_01_0090 + 717524-719080
Length = 518
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -2
Query: 293 PTPKESEP--FKSVVRTTNHSVIHSIAPFFLSTSNNLTC 183
PTP + P KS R NHS S A F+S L C
Sbjct: 98 PTPLPTFPALLKSCARAFNHSSRASAASVFVSKGMELHC 136
>11_02_0051 +
7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 25.8 bits (54), Expect = 8.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 229 WITEWFVVRTTDLNGSD 279
W+ E FVV ++D+N SD
Sbjct: 460 WVAEGFVVDSSDVNSSD 476
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,660,766
Number of Sequences: 37544
Number of extensions: 139586
Number of successful extensions: 313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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