Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0341
(327 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 28 1.6
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22) 28 1.6
SB_26971| Best HMM Match : Peptidase_C5 (HMM E-Value=0.13) 27 2.7
SB_14622| Best HMM Match : DUF1441 (HMM E-Value=1.6) 27 2.7
SB_11039| Best HMM Match : Lig_chan (HMM E-Value=1.2) 27 2.7
SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1) 27 4.8
SB_28375| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27) 26 6.3
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2) 26 6.3
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.3
SB_48644| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-21) 26 8.3
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17) 26 8.3
SB_21640| Best HMM Match : fn3 (HMM E-Value=2.3e-36) 26 8.3
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 261 CCSDNKPFGYPFDRPVLPQYFKQPNM 184
CC+ N P G P P PQ ++QP M
Sbjct: 448 CCNANMPQGPPPPPPPPPQMYQQPLM 473
>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
Length = 644
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/71 (25%), Positives = 39/71 (54%)
Frame = -2
Query: 251 TTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNXLIRKS 72
T + V+++++ + + S N S + +T+ +NYS + +LT + +NY+ L K+
Sbjct: 78 TLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLT---LSKNYSTL-SKN 133
Query: 71 KRTLTMTLATV 39
TL+ +T+
Sbjct: 134 YLTLSKNYSTL 144
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/52 (23%), Positives = 33/52 (63%)
Frame = -2
Query: 251 TTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRN 96
T + ++++++ +L+ S L + ++ ST+++NYS + +LT+ +I ++
Sbjct: 157 TLSIKLLNTLSKNYLTLSIKLLNTLSKNSSTLRKNYSTLSRNYLTLRRIPQH 208
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = -2
Query: 212 FLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT-----IHQIKRNYNXLIRKSKRTLTMTL 48
+L+ S N S + +T+ +NYS + +LT ++ + +NY+ L K+ TL+
Sbjct: 69 YLTLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTL-SKNYLTLSKNY 127
Query: 47 ATV 39
+T+
Sbjct: 128 STL 130
>SB_26971| Best HMM Match : Peptidase_C5 (HMM E-Value=0.13)
Length = 553
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 201 FKQPNMFFKKVLVYHEGELFPY 136
FKQ N++ VLV +G+L+PY
Sbjct: 99 FKQVNVWVNGVLVKAQGDLYPY 120
>SB_14622| Best HMM Match : DUF1441 (HMM E-Value=1.6)
Length = 426
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 157 MVDQDLLEEHVRLFEVLRKNGAIEWITEWFVVRTTDLNGSDSLG 288
M+D+ L E V + LRK ++ + + +V + +GS LG
Sbjct: 346 MLDEGLAREFVNRIQKLRKKAGLQPVDDVSIVYEVEPSGSQRLG 389
>SB_11039| Best HMM Match : Lig_chan (HMM E-Value=1.2)
Length = 116
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 249 NKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGELFPYLFNIPHYTP 109
N F + DRP+L +QP K ++ G + Y F +P +P
Sbjct: 24 NSNFAFISDRPILEYIARQPEYCGKLKVIGGFGSTYGYGFALPLNSP 70
>SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)
Length = 355
Score = 26.6 bits (56), Expect = 4.8
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -2
Query: 239 SVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNXLIR-KSKRT 63
S+ AP L+T+NN TC+ R+ + PI + +L H K+ L + K T
Sbjct: 19 SITTEDAPTSLATANNNTCNCRQK-NACPRKLPPI-ICYLPSHCNKKGQQHLRNLRKKAT 76
Query: 62 LTM 54
TM
Sbjct: 77 ATM 79
>SB_28375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 249 NKPFGYPFDRPVLPQY 202
N P GYP RP+L QY
Sbjct: 47 NPPHGYPRRRPILSQY 62
>SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)
Length = 799
Score = 26.2 bits (55), Expect = 6.3
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -2
Query: 281 ESEPFKSVVRTTNHSVIHSIAPFFLSTSNNLTCSSRRS--WSTMKENYSPIYLTFLTIHQ 108
+S F S + TT HS I SI + +S ++C S R+ + ++ +P L F I +
Sbjct: 112 KSYRFVSTISTTGHSSIDSIVQWNVS-EFVISCQSSRTSHYKSLPPTLAPRSLPF-RIER 169
Query: 107 IKRNYNXL 84
RN+ L
Sbjct: 170 SDRNWRSL 177
>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
Length = 468
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = -2
Query: 212 FLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT-----IHQIKRNYNXLIRKSKRTLTMTL 48
+L+ S N S + +T+ +NYS + +LT ++ + +NY+ L K+ TL+
Sbjct: 69 YLTLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTL-SKNYLTLSKNY 127
Query: 47 ATV 39
+T+
Sbjct: 128 STL 130
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = -2
Query: 251 TTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNXL 84
T + V+++++ + + S N S + +T+ +NYS + +LT + +NY+ L
Sbjct: 78 TLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLT---LSKNYSTL 130
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -2
Query: 260 VVRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT 117
+ + +N + +IAP T +N T +S+ +W T N + T T
Sbjct: 382 LTQNSNTTTTTTIAPAPEGTKSNTTVTSKPAWLTQNSNTTTTTSTIAT 429
>SB_48644| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-21)
Length = 364
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/77 (23%), Positives = 32/77 (41%)
Frame = -2
Query: 239 SVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNXLIRKSKRTL 60
+V+H + + T N+ WS P Y++ L H+ + ++ T
Sbjct: 124 AVMHPFSYGVIMTKKNVILMIMVCWSVSVIQGVPYYISKLLNHERAMYASSVVYALLFTA 183
Query: 59 TMTLATVFTYSHEILLL 9
L TV+ YS IL++
Sbjct: 184 LPNLFTVYAYSKIILVV 200
>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
Length = 1189
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 279 VRAIQVCCSDNKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGEL 145
V A++ +DN G + +L QYF+ +M FK + HE +L
Sbjct: 305 VAALKAVDADNSVIGTGSNHILLQQYFQHSDMTFKAL---HEQQL 346
>SB_21640| Best HMM Match : fn3 (HMM E-Value=2.3e-36)
Length = 399
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 221 APFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIK 102
AP +S N T S +WS +KEN S + + ++++
Sbjct: 5 APERISGYNTSTFSINVTWSALKENVSGVLRGYTVFYRMR 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,338,325
Number of Sequences: 59808
Number of extensions: 171302
Number of successful extensions: 440
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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