Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0341
         (327 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical ...    29   0.79 
AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical ...    28   1.8  
U40061-4|AAA81151.3|  239|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AF039051-3|AAB94261.2|  347|Caenorhabditis elegans Hypothetical ...    27   4.2  
Z93389-6|CAB07669.2|  300|Caenorhabditis elegans Hypothetical pr...    26   7.4  
Z35719-5|CAE45044.1|  296|Caenorhabditis elegans Hypothetical pr...    26   7.4  
U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical pr...    26   7.4  
AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical ...    26   7.4  
AL132949-37|CAB70100.3|  285|Caenorhabditis elegans Hypothetical...    25   9.7  
AL132949-4|CAB70101.2|  439|Caenorhabditis elegans Hypothetical ...    25   9.7  
AF016445-13|AAC69055.3|  371|Caenorhabditis elegans Ligand-gated...    25   9.7  
AC024863-2|AAP31420.1|  366|Caenorhabditis elegans Prion-like-(q...    25   9.7  
AC024863-1|AAF60877.1|  481|Caenorhabditis elegans Prion-like-(q...    25   9.7  

>AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical
           protein F53H1.3 protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -2

Query: 293 PTPKESEPFKSVVRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENY 144
           P  KE  PFK +  T   S+   +A    +   +LTC ++  W  +   +
Sbjct: 404 PLKKEMSPFKGIPSTRPFSMDDFLATLETNGGPSLTCGTKGDWQGLYRRF 453


>AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical
           protein K06H6.6 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 165 VYHEGELFPYLFNIPHYTPDK 103
           VY  G L PY + +PH+TP K
Sbjct: 302 VYRNGGLNPYDYYLPHWTPLK 322


>U40061-4|AAA81151.3|  239|Caenorhabditis elegans Hypothetical
           protein ZK563.5 protein.
          Length = 239

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 311 FVYPYEPTPKESEPFKSVVRTTNHSVIHSIAPFFLSTS 198
           F +PY    K++EPF+     T   + +     FLSTS
Sbjct: 129 FAFPYNHHAKDTEPFRKYFDKTWIEIYYVSLHNFLSTS 166


>AF039051-3|AAB94261.2|  347|Caenorhabditis elegans Hypothetical
           protein C14C6.3 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 165 VYHEGELFPYLFNIPHYTPDK 103
           VY  GEL PY + +PH+ P K
Sbjct: 314 VYRVGELNPYDYFMPHWIPLK 334


>Z93389-6|CAB07669.2|  300|Caenorhabditis elegans Hypothetical
           protein T13F3.5 protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 148 FSFMVDQDLLEEHVRLFEVLRKNGAI 225
           F F+ D+ + +  +RL +V+++NG +
Sbjct: 117 FEFLEDKSIQDNGLRLLDVMKQNGRV 142


>Z35719-5|CAE45044.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.7 protein.
          Length = 296

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 281 ESEPFKSVVRTTNHSVIHSIAPFFLSTSNNLTCSSR 174
           E    KSV+   ++   +S  PFF S++N + C ++
Sbjct: 14  EISVLKSVILDFSNLKTNSDCPFFCSSTNKMPCQTK 49


>U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical
           protein R02E12.2a protein.
          Length = 636

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 222 RPVLPQYFKQPNMFFKKV--LVYHEGELFPYLFNIPHYTP 109
           +P+L +Y + P  FFK+     +   ++ P LF   H +P
Sbjct: 232 QPILDKYNEDPEKFFKRFDSKPWFRRKVMPLLFGKSHKSP 271


>AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical
           protein C18G1.8 protein.
          Length = 365

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 153 GELFPYLFNIPHYTPDK 103
           G+L PY + +PH+TP K
Sbjct: 336 GQLLPYDYFLPHWTPLK 352


>AL132949-37|CAB70100.3|  285|Caenorhabditis elegans Hypothetical
           protein Y53F4B.4a protein.
          Length = 285

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 157 MVDQDLLEEHVRLFEVLRKNGAIEW 231
           +VD+ LL+ +VR   VL+KN   EW
Sbjct: 222 VVDEVLLDTYVRQNYVLKKNVLPEW 246


>AL132949-4|CAB70101.2|  439|Caenorhabditis elegans Hypothetical
           protein Y53F4B.4b protein.
          Length = 439

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 157 MVDQDLLEEHVRLFEVLRKNGAIEW 231
           +VD+ LL+ +VR   VL+KN   EW
Sbjct: 376 VVDEVLLDTYVRQNYVLKKNVLPEW 400


>AF016445-13|AAC69055.3|  371|Caenorhabditis elegans Ligand-gated
           ion channel protein 1 protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -2

Query: 209 LSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIK-RNYNXLIRKSKRTLTMTLA 45
           ++T N      +R W  + ++Y P      T+H+ +  N    I      L +T+A
Sbjct: 6   MATYNKFLADQKRLWDDLFKDYDPTLSAIYTLHKSQWINQTATIHPPITELKLTMA 61


>AC024863-2|AAP31420.1|  366|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
           isoform b protein.
          Length = 366

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 269 FKSVVRTTNHSVIHSIAPFF-LSTSNNLTCSSRRSWS 162
           F  +V + + SV + I  FF L T+  L  SS+  WS
Sbjct: 165 FTFIVSSPDESVRYQITDFFYLDTNGQLPQSSQGQWS 201


>AC024863-1|AAF60877.1|  481|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
           isoform a protein.
          Length = 481

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 269 FKSVVRTTNHSVIHSIAPFF-LSTSNNLTCSSRRSWS 162
           F  +V + + SV + I  FF L T+  L  SS+  WS
Sbjct: 165 FTFIVSSPDESVRYQITDFFYLDTNGQLPQSSQGQWS 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,039,442
Number of Sequences: 27780
Number of extensions: 136798
Number of successful extensions: 390
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)