Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0341
(327 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05... 31 0.18
At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1 ... 31 0.18
At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1 ... 31 0.18
At2g25730.1 68415.m03084 expressed protein 29 0.97
At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera... 28 1.3
At5g46050.1 68418.m05663 proton-dependent oligopeptide transport... 27 3.0
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 27 3.9
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 26 5.2
At5g09410.1 68418.m01090 calmodulin-binding protein similar to a... 26 5.2
At3g07180.2 68416.m00856 GPI transamidase component PIG-S-relate... 26 5.2
At3g07180.1 68416.m00855 GPI transamidase component PIG-S-relate... 26 5.2
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR... 26 6.8
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 25 9.0
>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
PF05794: T-complex protein 11
Length = 1131
Score = 31.1 bits (67), Expect = 0.18
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 201 STEEERGDRMDNRMVCCPNNRLEWL*LLRCRFIRIDEYKQ 320
S++EE G R++ R++ RLE L + R ++DE +Q
Sbjct: 83 SSDEELGQRIEARLLAAEQKRLEILAKAQMRLAKLDELRQ 122
>At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1
GI:1199467 and maize gl1 homolog (glossy1 locus)
GI:1209703 from [Arabidopsis thaliana]
Length = 623
Score = 31.1 bits (67), Expect = 0.18
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 248 TNHSVIHSIAPFFLSTSNNLTCS-SRRSWSTMKENYSPIYLTFLTIH 111
TN+S+ I F T++NLT S RS +E+ I+LT LT H
Sbjct: 257 TNYSLFMPIYDFIYGTTDNLTDSLYERSLEIEEESPDVIHLTHLTTH 303
>At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1
GI:1199467 and maize gl1 homolog (glossy1 locus)
GI:1209703 from [Arabidopsis thaliana]
Length = 627
Score = 31.1 bits (67), Expect = 0.18
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 248 TNHSVIHSIAPFFLSTSNNLTCS-SRRSWSTMKENYSPIYLTFLTIH 111
TN+S+ I F T++NLT S RS +E+ I+LT LT H
Sbjct: 257 TNYSLFMPIYDFIYGTTDNLTDSLYERSLEIEEESPDVIHLTHLTTH 303
>At2g25730.1 68415.m03084 expressed protein
Length = 2464
Score = 28.7 bits (61), Expect = 0.97
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = +1
Query: 157 MVDQDLLEEHVRLFEVLRKNGAIEWITEWFVVRTTDLNGSDSLGVGSYG*TNTNSWK 327
++D+ L + + L + +NGA +W+ + ++++ + N S S YG +NSW+
Sbjct: 1315 LIDEGKLMDALALSDRFLRNGASDWLLQ-LLIKSREENPSTSGRSQGYG-GQSNSWQ 1369
>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
putative similar to Swiss-Prot:P05055 polyribonucleotide
nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
phosphorylase) (PNPase) [Escherichia coli]
Length = 991
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 233 IHSIAPFFLSTSNNLTCSSRRSWSTMKENYS 141
+ S++P ST++NL S+ STMKEN S
Sbjct: 877 LKSVSPKNNSTASNLVSFSKAKKSTMKENLS 907
>At5g46050.1 68418.m05663 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 582
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -2
Query: 299 YEPTPKESEPFKSVVRTTNHSVIHSIAPFFLSTSNNLTCSSRRSW--STMKENYSPIYLT 126
Y+ P+ + + TT+ ++ + ++ F LST + +T R W + + E+ Y
Sbjct: 482 YDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGRGWILNNLNESRLDYYYL 541
Query: 125 FLTI 114
F +
Sbjct: 542 FFAV 545
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = -1
Query: 249 NKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGELFPY 136
N GY F RP +P YF P + K PY
Sbjct: 179 NPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 249 NKPFGYPFDRPVLPQYFKQP 190
N GY F RP +P YF P
Sbjct: 179 NPSMGYRFRRPFVPPYFYSP 198
>At5g09410.1 68418.m01090 calmodulin-binding protein similar to
anther ethylene-upregulated calmodulin-binding protein
ER1 GI:11612392 from [Nicotiana tabacum]
Length = 1007
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = -2
Query: 218 PFFLSTSNNLTCSSRR-----SWSTMKENYSPIYLTFLTIHQIKRNYNXLI 81
PF+++ SN CS R S ST K N + +Y T+ ++ + ++
Sbjct: 479 PFYVTCSNRFACSEVREFDFLSGSTQKINATDVYGTYTNEASLQLRFEKML 529
>At3g07180.2 68416.m00856 GPI transamidase component PIG-S-related
similar to GPI transamidase component PIG-S
(Phosphatidylinositol-glycan biosynthesis, class S
protein) (Swiss-Prot:Q96S52) [Homo sapiens]
Length = 454
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 221 APFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT 117
+PFFL ++ ++ R W K+ + YLT+LT
Sbjct: 416 SPFFLPVVGHVVLAAVREWKRYKQEKAK-YLTWLT 449
>At3g07180.1 68416.m00855 GPI transamidase component PIG-S-related
similar to GPI transamidase component PIG-S
(Phosphatidylinositol-glycan biosynthesis, class S
protein) (Swiss-Prot:Q96S52) [Homo sapiens]
Length = 599
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 221 APFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT 117
+PFFL ++ ++ R W K+ + YLT+LT
Sbjct: 561 SPFFLPVVGHVVLAAVREWKRYKQEKAK-YLTWLT 594
>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1226
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -2
Query: 185 CSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNXLIR 78
CS+ + + + +N +YL +I ++ N+N L R
Sbjct: 709 CSNLKEFRVISQNLETLYLDGTSIKELPLNFNILQR 744
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +1
Query: 157 MVDQDLLEEHVRLFEVLRKNGAIEWITEWFVVRTTDLNGSD 279
M DQDL E VRL + K G E + + R DL G D
Sbjct: 1 MKDQDLELEKVRLISLATKLGFDEDSAKKCLDRFVDLYGDD 41
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,472,849
Number of Sequences: 28952
Number of extensions: 122392
Number of successful extensions: 350
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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