Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0340
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.66 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    29   0.66 
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    28   1.2  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    26   4.7  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    26   6.2  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   8.2  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -2

Query: 236 VIHSIAPFFL-STSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTL 60
           +IHSI   F+ S ++NL  +S+       E    ++ TF+ I + +   NAL+       
Sbjct: 493 IIHSIWTLFVDSRTSNLLRASQVDNKVENEALMGLFETFVKIKKFEYESNALLVSGTGYY 552

Query: 59  TMTLATVFTYSHEILLL 9
            + L T+   S  IL++
Sbjct: 553 NVVLETLKKSSSNILIM 569


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 158  MKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTMTLATVFTYSHEILL 12
            +KE +  I L +     I R  + LIR+ K ++   L+ V  + H I L
Sbjct: 3687 LKEKHETIRLAYSESQSINRKVDELIRRYKLSIKSFLSVVVVFQHFISL 3735


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/85 (23%), Positives = 38/85 (44%)
 Frame = -2

Query: 302 PYEPTPKESEPFKSVVRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTF 123
           PY+P    S PF +V++    SV+H   PF        + ++ +   + +     +    
Sbjct: 18  PYDPPQGSSRPFFTVLKRAFSSVLH---PFTSGLDEKASGTASKDRKSGRAGTKSLLTPE 74

Query: 122 LTIHQIKRNYNALIRKSKRTLTMTL 48
           LT H + ++   +IR S R+   T+
Sbjct: 75  LTPHYLGKS-PRIIRVSNRSHVRTI 98


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -2

Query: 353 RARYHDGFPFQLFVFVYPYEPTPKESEPFKSVVRTTNHSVIHSIAPFFLSTSNNLT 186
           R  +   F      F   YEP    S P++++     +S  + + P FL++S + T
Sbjct: 208 RPTHRAAFRKDAIAFDMSYEPLFCISGPYEALKEKFGNSFANGLPPVFLNSSRSFT 263


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 329 PFQLFVFVYPYEPTPKESEPFKSVVRTTN 243
           PF++ V +YP +P     EP  S V + N
Sbjct: 115 PFKIEVGIYPSKPNNLNKEPPASTVHSDN 143


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -2

Query: 299 YEPTPKESEPFKSVVRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYS 141
           +EP    + P  SV  +T+     S+AP F+++    T    +S     E++S
Sbjct: 263 HEPEETPASPTPSVSASTSRERSTSVAPSFITSDQAATPDVLKSEEAHVESFS 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,506
Number of Sequences: 5004
Number of extensions: 58407
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)