Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0340
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0306 + 14875755-14876822                                         31   1.2  
02_05_0441 + 29040250-29040524,29040656-29040772,29040834-290411...    29   2.8  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   6.4  

>01_03_0306 + 14875755-14876822
          Length = 355

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 298 YG*TNTNSWKGNPSWYRARIRNHGHSCFLCEIVIRSQFHTTYE 426
           Y  + ++SWK NP  Y A +     S F  E +   +F+ TYE
Sbjct: 190 YNTSESDSWKFNPCSYAALVETESFS-FSTEYITTMRFNDTYE 231


>02_05_0441 +
           29040250-29040524,29040656-29040772,29040834-29041143,
           29041863-29042018,29042332-29042483,29042783-29042936,
           29043897-29043998,29044168-29044209
          Length = 435

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/54 (38%), Positives = 25/54 (46%)
 Frame = +3

Query: 480 LIALRSLPAFSRETCRASCINESANARGEAVCVLGALPLPRSLTRCARXFGCGE 641
           L+ L  L  FS ET   S     A   G  VCV+GA+ +   L R    FG GE
Sbjct: 129 LMGLSILVCFSTETVNLSTHEGRAKIGGTIVCVMGAVFM--VLYRGPALFGSGE 180


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 540 NESAN---ARGEAVCVLGALPLPRSLTRCAR 623
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,592,604
Number of Sequences: 37544
Number of extensions: 387981
Number of successful extensions: 949
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)