Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0340
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC024796-4|AAK29898.3|  539|Caenorhabditis elegans C-terminal sr...    28   5.8  
AB096875-1|BAC76831.1|  539|Caenorhabditis elegans CSK-1 protein.      28   5.8  
AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical
           protein F53H1.3 protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -2

Query: 293 PTPKESEPFKSVVRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENY 144
           P  KE  PFK +  T   S+   +A    +   +LTC ++  W  +   +
Sbjct: 404 PLKKEMSPFKGIPSTRPFSMDDFLATLETNGGPSLTCGTKGDWQGLYRRF 453


>AC024796-4|AAK29898.3|  539|Caenorhabditis elegans C-terminal src
           kinase protein 1 protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 382 GNSYDHDYEFELGTTMDSPSSCLYSSIRMN 293
           GNSY+H ++F +   +   S  + S  RMN
Sbjct: 4   GNSYNHHHQFPMSIPISCSSHSIQSQSRMN 33


>AB096875-1|BAC76831.1|  539|Caenorhabditis elegans CSK-1 protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 382 GNSYDHDYEFELGTTMDSPSSCLYSSIRMN 293
           GNSY+H ++F +   +   S  + S  RMN
Sbjct: 4   GNSYNHHHQFPMSIPISCSSHSIQSQSRMN 33


>AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical
           protein K06H6.6 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 165 VYHEGELFPYLFNIPHYTPDK 103
           VY  G L PY + +PH+TP K
Sbjct: 302 VYRNGGLNPYDYYLPHWTPLK 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,871,174
Number of Sequences: 27780
Number of extensions: 335729
Number of successful extensions: 848
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)