Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0340
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05...    32   0.33 
At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1 ...    31   0.76 
At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1 ...    31   0.76 
At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identica...    29   2.3  
At5g54350.1 68418.m06768 expressed protein  ; expression support...    29   3.1  
At3g24720.1 68416.m03104 protein kinase family protein protein k...    29   3.1  
At2g25730.1 68415.m03084 expressed protein                             29   4.1  
At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera...    28   5.4  
At1g04700.1 68414.m00467 protein kinase family protein low simil...    28   7.1  
At3g17000.1 68416.m02171 ubiquitin-conjugating enzyme, putative ...    27   9.4  

>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
           PF05794: T-complex protein 11
          Length = 1131

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 201 STEEERGDRMDNRMVCCPNNRLEWL*LLRCRFIRIDEYKQLEGESIVV 344
           S++EE G R++ R++     RLE L   + R  ++DE +Q    S+ +
Sbjct: 83  SSDEELGQRIEARLLAAEQKRLEILAKAQMRLAKLDELRQAAKTSVEI 130


>At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1
           GI:1199467 and maize gl1 homolog (glossy1 locus)
           GI:1209703 from [Arabidopsis thaliana]
          Length = 623

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 248 TNHSVIHSIAPFFLSTSNNLTCS-SRRSWSTMKENYSPIYLTFLTIH 111
           TN+S+   I  F   T++NLT S   RS    +E+   I+LT LT H
Sbjct: 257 TNYSLFMPIYDFIYGTTDNLTDSLYERSLEIEEESPDVIHLTHLTTH 303


>At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1
           GI:1199467 and maize gl1 homolog (glossy1 locus)
           GI:1209703 from [Arabidopsis thaliana]
          Length = 627

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 248 TNHSVIHSIAPFFLSTSNNLTCS-SRRSWSTMKENYSPIYLTFLTIH 111
           TN+S+   I  F   T++NLT S   RS    +E+   I+LT LT H
Sbjct: 257 TNYSLFMPIYDFIYGTTDNLTDSLYERSLEIEEESPDVIHLTHLTTH 303


>At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identical
           to vernalization 2 protein [Arabidopsis thaliana]
           gi|16945788|gb|AAL32135
          Length = 440

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 421 MLCGIVSG*QFHTGNSYD-HDYEFEL 347
           MLCG   G QFH  +S+D  ++EF+L
Sbjct: 95  MLCGSFKGLQFHLNSSHDLFEFEFKL 120


>At5g54350.1 68418.m06768 expressed protein  ; expression supported
           by MPSS
          Length = 279

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 256 TTDLNGSDSLGVGSYG*TNTNSWKG-NPSWYR 348
           T D+N   +LG  S+  TN +SW   +PS+YR
Sbjct: 116 TNDINLDLTLGPSSWSNTNPSSWSNTDPSFYR 147


>At3g24720.1 68416.m03104 protein kinase family protein protein
           kinase family; similar to tyrosine-protein kinase
           GB:P18160 from [Dictyostelium discoideum]
          Length = 297

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 247 VVRTTDLNGSDSLGVGSYG*TNTNSWKGNPSWYRARIRNHGHSCF 381
           +++  DL     LG G+YG     +W+G     + RIRN   SCF
Sbjct: 10  IIKNADLEDLTELGSGTYGTVYHGTWRGTDVAIK-RIRN---SCF 50


>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +1

Query: 157  MVDQDLLEEHVRLFEVLRKNGAIEWITEWFVVRTTDLNGSDSLGVGSYG*TNTNSWK 327
            ++D+  L + + L +   +NGA +W+ +  ++++ + N S S     YG   +NSW+
Sbjct: 1315 LIDEGKLMDALALSDRFLRNGASDWLLQ-LLIKSREENPSTSGRSQGYG-GQSNSWQ 1369


>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
           putative similar to Swiss-Prot:P05055 polyribonucleotide
           nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
           phosphorylase) (PNPase) [Escherichia coli]
          Length = 991

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 233 IHSIAPFFLSTSNNLTCSSRRSWSTMKENYS 141
           + S++P   ST++NL   S+   STMKEN S
Sbjct: 877 LKSVSPKNNSTASNLVSFSKAKKSTMKENLS 907


>At1g04700.1 68414.m00467 protein kinase family protein low
           similarity to EDR1 [Arabidopsis thaliana] GI:11127925;
           contains Pfam profile: PF00069 Eukaryotic protein kinase
           domain
          Length = 1042

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 247 VVRTTDLNGSDSLGVGSYG*TNTNSWKGNPSWYRARIRNHGHSCF 381
           +++ TDL     LG G++G      W+G     + RI+N   SCF
Sbjct: 760 IIKNTDLEDLHELGSGTFGTVYYGKWRGTDVAIK-RIKN---SCF 800


>At3g17000.1 68416.m02171 ubiquitin-conjugating enzyme, putative
           similar to Non-Canonical UBiquitin Conjugating Enzyme 1
           (NCUBE1) from [Gallus gallus] GI:7362937, [Mus musculus]
           GI:7363050, [Homo sapiens] GI:7362973; contains Pfam
           profile PF00179: Ubiquitin-conjugating enzyme
          Length = 309

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 429 RLVCCVEL*ADNNFTQETAMTMITNSSSVPRWIPLPAV 316
           R +   +   D+   +ETA  + T +S VP   PLPAV
Sbjct: 210 RSIATTDTIVDDQIIEETAEAVNTAASVVPAAAPLPAV 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,861,433
Number of Sequences: 28952
Number of extensions: 307614
Number of successful extensions: 753
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)