Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0337
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    28   1.2  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   3.6  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   4.8  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   8.4  

>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 56  NINNSEYKIAEYWKFPKYIHTYMKIAHGMECKNF 157
           N+   E KI E+W+     HT +K++ G     F
Sbjct: 4   NVPKEEEKIVEFWREIDAFHTQLKLSQGRPTYTF 37


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 605 LMTSFKSTLMLPSFFKIHCNLNFK 676
           L+T F  T++LP  FK   NLNFK
Sbjct: 96  LLTFFCWTVLLPLIFKHVWNLNFK 119


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 330 HLTCFYYSKNVSEVCT*LNN*LFYT*LCNAY*FNHNKNRMDIDTMKI 470
           HL  F Y K++ + C+ LN+ L      +   F HN    DIDT+ +
Sbjct: 279 HLFAFRYDKSLGKFCSFLNHNLLSLCSPSGVLFGHN----DIDTIYV 321


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 151 FTFHTMCYFHVCMYVFWKFPVFSNFIFTVINITCN 47
           F F   C    C+  +W F +FS  +F +I + C+
Sbjct: 202 FVFQIFCCVLWCLDDYWYFSLFS--MFMIIALECS 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,554
Number of Sequences: 5004
Number of extensions: 53658
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)