Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0337
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   2.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   3.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   3.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   3.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.8  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   6.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.0  

>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 243 LHYNVNYQEMI 275
           LHYN+NY E I
Sbjct: 334 LHYNINYIEQI 344


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 125 KIAHGMECKNFHGLNVYTFKS*NKNCNILLMSIKWLINFI 244
           KI   +  K  H  N Y +   N N N     + + IN+I
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 125 KIAHGMECKNFHGLNVYTFKS*NKNCNILLMSIKWLINFI 244
           KI   +  K  H  N Y +   N N N     + + IN+I
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 125 KIAHGMECKNFHGLNVYTFKS*NKNCNILLMSIKWLINFI 244
           KI   +  K  H  N Y +   N N N     + + IN+I
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYI 119


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 173 IHLIHGSFYIPYHVLFSCMY 114
           I+   GSFYIP  V+    Y
Sbjct: 204 IYATLGSFYIPLFVMIQVYY 223


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 656 HCNLNFKCYY 685
           +C  NF CYY
Sbjct: 10  YCRRNFSCYY 19


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +2

Query: 125 KIAHGMECKNFHGLNVYTFKS*NKNCNILLMSIKWLINFI 244
           KI   +  +  H  N Y +   N N N     + + IN+I
Sbjct: 80  KIISSLSNRTIHNNNNYKYNYNNNNYNNNCKKLYYNINYI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,057
Number of Sequences: 438
Number of extensions: 3735
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)