Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0337
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14180.1 68417.m02189 expressed protein ; expression supporte...    28   7.3  
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    27   9.6  

>At4g14180.1 68417.m02189 expressed protein ; expression supported
           by MPSS
          Length = 1268

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 4   ISTNNLFGNKIHNFY 48
           IS NNL GN++HN Y
Sbjct: 721 ISRNNLIGNEVHNVY 735


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 635 LPSFFKIHCNLNFKCYYHHALISIFLFQ 718
           LP F KIH NL +KC    AL+S+ LF+
Sbjct: 130 LPQFHKIHFNL-YKC---EALVSLRLFE 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,757,569
Number of Sequences: 28952
Number of extensions: 233400
Number of successful extensions: 411
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)