Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0333
         (737 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    39   0.15 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    38   0.34 
UniRef50_Q0SHW7 Cluster: Putative uncharacterized protein; n=1; ...    34   4.2  
UniRef50_Q7NGA4 Cluster: Gll3269 protein; n=4; Bacteria|Rep: Gll...    33   7.3  
UniRef50_A7B1N8 Cluster: Putative uncharacterized protein; n=1; ...    33   7.3  
UniRef50_A5P3C2 Cluster: Putative uncharacterized protein; n=1; ...    33   9.7  
UniRef50_A0PYD2 Cluster: Helicase, SNF2/RAD54 family, putative; ...    33   9.7  
UniRef50_Q55A22 Cluster: Putative uncharacterized protein; n=3; ...    33   9.7  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 38.7 bits (86), Expect = 0.15
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -1

Query: 620 RWVDELTAHLVLSGYRNP 567
           RWVDELTAHLVLSGY +P
Sbjct: 158 RWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 37.5 bits (83), Expect = 0.34
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -2

Query: 445 AGWWCLPARTYKRSYHLY 392
           A WW LPART+KRSYH Y
Sbjct: 569 AEWWYLPARTHKRSYHRY 586


>UniRef50_Q0SHW7 Cluster: Putative uncharacterized protein; n=1;
           Rhodococcus sp. RHA1|Rep: Putative uncharacterized
           protein - Rhodococcus sp. (strain RHA1)
          Length = 243

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 502 TTAAPP---FNSKRITSSRRK*AGWWCLPART 416
           TT  PP   + S R  S+RR  AGWWC  ART
Sbjct: 3   TTPCPPPRSWVSSRPASARRAAAGWWCRSART 34


>UniRef50_Q7NGA4 Cluster: Gll3269 protein; n=4; Bacteria|Rep:
           Gll3269 protein - Gloeobacter violaceus
          Length = 651

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +1

Query: 328 KINKPNIVSSLDTYIQVYRYIYTGGRTSCKSARVGTTTLPISAV 459
           KI     V   +T+ Q+ RYIYT G T+ +S +V  T LP S++
Sbjct: 137 KIGSTQYVYIAETH-QINRYIYTNGDTTAQSRQVIVTNLPDSSL 179


>UniRef50_A7B1N8 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus gnavus ATCC 29149|Rep: Putative
           uncharacterized protein - Ruminococcus gnavus ATCC 29149
          Length = 668

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -3

Query: 453 GNRQGGGAYPRGLTRGPTTCIYISVYLYICIKG*YNIWFIYLCN*RLVLFGIANKSLM 280
           GN  G G YP+  +  P  C + ++  +      YN++ I+LC   LVLFG+    LM
Sbjct: 39  GNFAGNGTYPQAASLHPLVCFHTALTDFP-----YNLYGIFLC---LVLFGLLTFLLM 88


>UniRef50_A5P3C2 Cluster: Putative uncharacterized protein; n=1;
           Methylobacterium sp. 4-46|Rep: Putative uncharacterized
           protein - Methylobacterium sp. 4-46
          Length = 156

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = -3

Query: 492 PHPSI----RNALPLHGGNRQGGGAYPRGLTRGP 403
           PHP +    R   P HGGN    G  PRG  RGP
Sbjct: 11  PHPRVAPGERGRRPRHGGNVAAPGMLPRGSPRGP 44


>UniRef50_A0PYD2 Cluster: Helicase, SNF2/RAD54 family, putative;
           n=1; Clostridium novyi NT|Rep: Helicase, SNF2/RAD54
           family, putative - Clostridium novyi (strain NT)
          Length = 1041

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 114 YYTIYISRGERLFGLSDIFATTRESLKLKTWKKYHNKKYFF 236
           ++ I   + ER++ LS++    R + K+ T +K+H+K Y F
Sbjct: 94  FHNINEEQEERIYDLSEMIKAGRVNFKIYTKEKFHSKAYIF 134


>UniRef50_Q55A22 Cluster: Putative uncharacterized protein; n=3;
           Eukaryota|Rep: Putative uncharacterized protein -
           Dictyostelium discoideum AX4
          Length = 1180

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 204 WKKYHNKKYFFRYLNGVT*LKFN*KPSNSCWQYQIKQAF 320
           WK +HNK  FF+ +N +  LKF+    ++ +   I++ F
Sbjct: 35  WKVFHNKFLFFKIINSIEELKFDFPNISTYYDLNIRKKF 73


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 684,008,040
Number of Sequences: 1657284
Number of extensions: 13810212
Number of successful extensions: 31026
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30511
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)