Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0333
         (737 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   4.5  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   5.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.9  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   7.9  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +1

Query: 508 SETLELISQGGWRIYVVDVY-GFR*PLNTRWAVSSSTHLSNKKIKYIIYMN 657
           +E +EL  +GGW++   D           +W    S    + K++Y   +N
Sbjct: 300 NEIVELQKEGGWKVVWDDTQKNTHMYKGDQWVAFDSPKAISNKVEYAKSLN 350


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 186 SLKLKTWKKYHNKKYFFRYLN 248
           SLK K W K +NK   F+Y++
Sbjct: 99  SLKTKEWAKLNNK---FQYID 116


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 310 NKPLITKINKPNIVSSLDTYIQVYRY 387
           NK   T +NK  + S + ++  VYRY
Sbjct: 262 NKCDYTCVNKSMLNSHMKSHSNVYRY 287


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 310 NKPLITKINKPNIVSSLDTYIQVYRY 387
           NK   T +NK  + S + ++  VYRY
Sbjct: 20  NKCDYTCVNKSMLNSHMKSHSNVYRY 45


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,561
Number of Sequences: 336
Number of extensions: 3854
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)