Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0333
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    27   3.7  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    26   4.9  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   8.5  

>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 162 RLNQIAFHPSIYK 124
           R+NQI FHP +YK
Sbjct: 162 RVNQIEFHPQVYK 174


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 486 PSIRNALPLHGGNRQGGGAYPRGLTRGP 403
           P IRN  P  G +R G   YPR L+  P
Sbjct: 452 PHIRNIDPFGGLSRLGREEYPRRLSNPP 479


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 298 NTK*NKPLITKINKPNIVSSLDTYIQVYRYIYTGGRTSCKSARV 429
           N + N PL T     N  + + TYI VY+++++G     K   V
Sbjct: 146 NQRTNSPL-TWFQLSNASAEVPTYIGVYKHMFSGNNHITKDLLV 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,282
Number of Sequences: 5004
Number of extensions: 59670
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)