Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0333
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0243 - 13433276-13434154,13434192-13434593,13434730-13434750     32   0.55 

>06_02_0243 - 13433276-13434154,13434192-13434593,13434730-13434750
          Length = 433

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 456 GGNRQGGGAYPRGLTRGPTTCIYISVYLYIC 364
           GGNR+GG +Y R + RG T  + +S+  Y C
Sbjct: 356 GGNRRGGYSYGR-VWRGTTILVIVSMLAYFC 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,935,592
Number of Sequences: 37544
Number of extensions: 382595
Number of successful extensions: 766
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)