Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0332
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   3.6  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    26   6.3  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    25   8.4  

>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 416 YKIFVFGHGLPNIQYITQAHLHCALDI 336
           YK+ V   G+PN+ Y  Q  LH  L I
Sbjct: 59  YKLLVGNAGIPNVYYFGQEGLHNILVI 85


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 715 VLGDRFRSRRQTIVLMTLLKIGWKKNL 635
           VLGD  RS R     ++  K+GWK +L
Sbjct: 31  VLGDIARSPRMQYHAVSFAKLGWKVDL 57


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 67  GCVSAFYNVNTISERFDNYEI 5
           GC +AFY +  I+ER  N ++
Sbjct: 288 GCAAAFYTLGQIAERQGNIDL 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,945
Number of Sequences: 5004
Number of extensions: 58741
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)