Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0332
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7592| Best HMM Match : PI-PLC-Y (HMM E-Value=1.1e-33)               28   6.7  
SB_6709| Best HMM Match : PCNA_C (HMM E-Value=9.8)                     28   6.7  

>SB_7592| Best HMM Match : PI-PLC-Y (HMM E-Value=1.1e-33)
          Length = 997

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 208  FECG*HVLFAGKSDVSLDTCSRMLNVASFNVHR*V-DVDFQRTN 80
            F  G HV+F G S  SL T  +M  V + N H+ V DV  + TN
Sbjct: 952  FASGEHVMFVGLSTQSLCTSFKMA-VIAVNEHKLVFDVSCENTN 994


>SB_6709| Best HMM Match : PCNA_C (HMM E-Value=9.8)
          Length = 279

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 548 HKKYITLLKKEPARSTKSK-TADARVNERPARR*HRAPQNLQLCRYK 411
           H KYIT++  EP  S   +  A +  + +  R  HR     ++C +K
Sbjct: 51  HSKYITIIADEPYFSRHYRPVATSNFHRKGTRPTHRTTLTFEVCPFK 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,723,619
Number of Sequences: 59808
Number of extensions: 423692
Number of successful extensions: 864
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)