Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0332
         (728 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ297933-1|CAC35453.2|  392|Anopheles gambiae Ag9 protein protein.     26   1.0  
CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein ...    25   3.2  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    24   5.5  

>AJ297933-1|CAC35453.2|  392|Anopheles gambiae Ag9 protein protein.
          Length = 392

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 270 IRDIFTNNSQDNIKKKKQWFCYYIQGTM*MCLGYILDVRE-TVSENE 407
           I D+ TN++     KK QW  YY++G    CL +I   R  TVS +E
Sbjct: 135 IADLDTNSAL----KKNQWGSYYLKG----CLSFIPSKRSITVSWDE 173


>CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein
           protein.
          Length = 1087

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 252 SILNRQTINLFGWFTSSVDDMFC 184
           +IL R TIN+    TS    +FC
Sbjct: 833 NILGRDTINILQLLTSETKSIFC 855


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +1

Query: 400 KTKILYLHSCKFWGARCQRRAGRSLTRASAVFDFVLLAGSFFSKVMY---FLWNDRFIYL 570
           K + L  ++   WG   + + G  +       D + L+G F  K+     F  ND+  +L
Sbjct: 53  KDERLAFNAFALWGDNQKDQTGEIMIEDDGANDVITLSGDFAEKIWVPDTFFANDKNSFL 112

Query: 571 Y 573
           +
Sbjct: 113 H 113


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 725,859
Number of Sequences: 2352
Number of extensions: 14573
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)