Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0332
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79757-8|CAB02128.2|  355|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U39678-8|AAK39208.2|  228|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF016669-3|AAB66097.1|  275|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z79757-8|CAB02128.2|  355|Caenorhabditis elegans Hypothetical
           protein F55B12.7 protein.
          Length = 355

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 249 STVDVVAIRDIFTNNSQDNIKKKKQWFCYYIQGTM*MCLGYILDVRET 392
           +T   + +R I     QD+ K++K+W   ++Q  M  CL  +  +  T
Sbjct: 241 ATASRLLMRKIVGLTKQDSSKRRKRWMIMFLQSVMQDCLHLVDSINAT 288


>U39678-8|AAK39208.2|  228|Caenorhabditis elegans Hypothetical
           protein C39D10.6 protein.
          Length = 228

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = +1

Query: 469 SLTRASAVFDFVLLAGSF----FSKVMYFLWNDRFIYLY 573
           S TR+S VF +  ++ +F    F  +++ +W ++ +YLY
Sbjct: 65  SFTRSSTVFVYTCMSTAFSIVIFGSLLFGVWKEKRLYLY 103


>AF016669-3|AAB66097.1|  275|Caenorhabditis elegans Hypothetical
           protein K10G6.2 protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 352 CKCAWVIYWMLGRPC-PKTKILYLHSCKFWGARCQ 453
           C+C   + WM+   C P T+    ++C+ W A+C+
Sbjct: 141 CECLH-LQWMMNYECYPGTRAPAYNNCQRWAAKCR 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,802,783
Number of Sequences: 27780
Number of extensions: 327430
Number of successful extensions: 688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)