Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0332
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.0  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 440 PQNLQLCRYKIFVFGHGLPNIQYITQAHL 354
           P + QLC  +I  FG+ + +I+Y   A L
Sbjct: 146 PMDRQLCHIEIESFGYTMRDIRYKWNAGL 174


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 440 PQNLQLCRYKIFVFGHGLPNIQY 372
           P + QLC  +I  FG+ + +I+Y
Sbjct: 146 PMDRQLCHIEIESFGYTMRDIRY 168


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 440 PQNLQLCRYKIFVFGHGLPNIQY 372
           P + QLC  +I  FG+ + +I+Y
Sbjct: 85  PMDRQLCHIEIESFGYTMRDIRY 107


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 304 ILKKKNNGFVIISKAQCKCAWVI 372
           ++ +  NG VI+  A+C   W +
Sbjct: 195 VVYENKNGSVILDTARCSMKWTL 217


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 329 KPLFFFFNIVLRVICEN 279
           +P+F+ FN++L  I  N
Sbjct: 212 RPMFYVFNLILPCILIN 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,820
Number of Sequences: 438
Number of extensions: 3921
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)