Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0330
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    23   3.2  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   5.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.4  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   7.4  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   9.8  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 563 VSVMSSSNGFLRIVATDGN 619
           VS+++  NG   +VAT G+
Sbjct: 34  VSILTIDNGVFEVVATSGD 52


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -2

Query: 635 SRQRHHFRRWLQFLRNRLRKT*H*LGLNDFEINEYF*NKSCVVNLILG 492
           +R +H F         R ++    LGLN+ +I  +F NK   +    G
Sbjct: 241 ARLKHEFAENRYLTERRRQQLSAELGLNEAQIKIWFQNKRAKIKKASG 288


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 679 LKSDLQGGSAPTRYPADKDTISVGGY 602
           L  DLQG SAP      K   ++G Y
Sbjct: 178 LGKDLQGISAPVEAHLRKGRGAIGAY 203


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 256 STMYKSLFWYKTFCTRTILCITFTK 182
           S  Y+ +   + FC+   LC+T  K
Sbjct: 246 SDTYQGILVVQFFCSLVALCLTMYK 270


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/37 (21%), Positives = 21/37 (56%)
 Frame = +3

Query: 159 IQIAYNYYFVNVIHKMVRVQKVLYQNNDLYMVELKKN 269
           +Q+ + +Y+   +  +V + +  Y+N +L + E  +N
Sbjct: 150 VQLYFQFYYTYFLCVIVCIFRGKYRNINLLLTEQLQN 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,255
Number of Sequences: 336
Number of extensions: 3537
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)