Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0330
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    28   1.1  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    27   2.0  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    26   4.6  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    26   4.6  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.0  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.0  

>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 218 LYSHHFMYYIYKVVIVS-YLYVLQ 150
           L+ HH +YYIY  ++++ Y Y +Q
Sbjct: 377 LFEHHDVYYIYNAIVLNDYAYWIQ 400


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 205 WCEYKKSCTKIMTYTWLS*KKTLYLLTFYCVIL 303
           W EY +S + ++ Y W +    L    F C++L
Sbjct: 239 WAEYFRSFSTLLPYLWPTKDYRLQFQIFICIVL 271


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 530 NTH*FQNHLSLVSVMSSSNGFLRIVATDGNGVFVGWISSWCRSSLQITLQDDTG 691
           NT     H+   ++++ +N ++R V        +G I+SW  S LQI   D+ G
Sbjct: 516 NTPLVMQHID--NLVTQANIYIREVGQQPCSRLLGQIASWITSMLQIFGLDENG 567


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +2

Query: 560 LVSVMSSSNGFL---RIVATDGNGVFVGWISSWCRSSLQIT 673
           L S M +S G      ++A  G G F  W++ W    +Q+T
Sbjct: 97  LCSSMPTSGGLYYAAAVLAPKGWGPFAAWLTGWSNYLVQVT 137


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 295 HSKMLINTMFFFNSTMYKSLFWYKT 221
           HSK L++    + S MYKSL   KT
Sbjct: 357 HSKNLVSERMLYLSLMYKSLVDLKT 381


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 226 CTKIMTYTWLS*KKTLYLLTFYCVILFKFLLS-FKIMMLSCRP 351
           C K++TY  L  +  +Y+  F  V  FK  LS + ++ +S  P
Sbjct: 145 CRKVLTYKSLGIRTAVYVGAFCFVNCFKTRLSNWMLLPISANP 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,514
Number of Sequences: 5004
Number of extensions: 53265
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)