Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0330
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0750 + 10909130-10909616,10912257-10912916,10913139-109135...    28   8.3  

>03_02_0750 +
           10909130-10909616,10912257-10912916,10913139-10913544,
           10914376-10914757,10914918-10915679,10916106-10916165,
           10916695-10917105
          Length = 1055

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = +2

Query: 473 KITLKGHPKLNLPRSFYFKNTH*FQNHLSLVSVMSSSNGFLRIVATDGNGVF 628
           K++  G P   +  + +F+      N + L  ++   NG+L ++ T G  +F
Sbjct: 411 KVSPDGEPLSVIKNATFFQRPGWINNFVGLNGIVYHPNGYLLVIHTSGGDLF 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,719,135
Number of Sequences: 37544
Number of extensions: 282762
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)