Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0330
         (705 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    25   2.3  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    25   2.3  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   7.1  

>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 638 SSRQRHHFRRWLQFLRNRLRK 576
           S +  HH  + LQF+ NR++K
Sbjct: 423 SHKDLHHILKELQFITNRMKK 443


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 638 SSRQRHHFRRWLQFLRNRLRK 576
           S +  HH  + LQF+ NR++K
Sbjct: 423 SHKDLHHILKELQFITNRMKK 443


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 660 EDRHQLDIQPTKTPFPSVATILKKPFEED 574
           E+   +D+ PT    P    IL K FE+D
Sbjct: 692 EEAVPVDLNPTIYYGPDYTVILDKEFEDD 720


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 676,576
Number of Sequences: 2352
Number of extensions: 12606
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71922660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)