Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0330
         (705 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M32661-1|AAA28897.1|  498|Drosophila melanogaster protein ( D.me...    30   3.5  
AY071475-1|AAL49097.1|  604|Drosophila melanogaster RE54962p pro...    30   3.5  
AE014134-667|AAF51069.1|  498|Drosophila melanogaster CG2822-PA,...    30   3.5  
AE014134-666|AAF51068.3|  604|Drosophila melanogaster CG2822-PB,...    30   3.5  

>M32661-1|AAA28897.1|  498|Drosophila melanogaster protein (
           D.melanogaster Shaw2protein mRNA, complete cds. ).
          Length = 498

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 407 SSTGVKTLSQ*NVFFSAISILIKITLKGHPKLNLP 511
           SS   KT+   +VFF  ISIL    LK HP + +P
Sbjct: 169 SSNAAKTIGVVSVFFICISIL-SFCLKTHPDMRVP 202


>AY071475-1|AAL49097.1|  604|Drosophila melanogaster RE54962p
           protein.
          Length = 604

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 407 SSTGVKTLSQ*NVFFSAISILIKITLKGHPKLNLP 511
           SS   KT+   +VFF  ISIL    LK HP + +P
Sbjct: 169 SSNAAKTIGVVSVFFICISIL-SFCLKTHPDMRVP 202


>AE014134-667|AAF51069.1|  498|Drosophila melanogaster CG2822-PA,
           isoform A protein.
          Length = 498

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 407 SSTGVKTLSQ*NVFFSAISILIKITLKGHPKLNLP 511
           SS   KT+   +VFF  ISIL    LK HP + +P
Sbjct: 169 SSNAAKTIGVVSVFFICISIL-SFCLKTHPDMRVP 202


>AE014134-666|AAF51068.3|  604|Drosophila melanogaster CG2822-PB,
           isoform B protein.
          Length = 604

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 407 SSTGVKTLSQ*NVFFSAISILIKITLKGHPKLNLP 511
           SS   KT+   +VFF  ISIL    LK HP + +P
Sbjct: 169 SSNAAKTIGVVSVFFICISIL-SFCLKTHPDMRVP 202


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,445,759
Number of Sequences: 53049
Number of extensions: 513295
Number of successful extensions: 816
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)