Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0329
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    27   0.16 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    27   0.16 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    26   0.28 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.5  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 416 FGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQCINVFAQ 273
           FGQD N DGV+N    + +        T +  F  +NVF+  + VF Q
Sbjct: 434 FGQDLNQDGVMNINGVLFVFLT---NMTFQNVFAVINVFSGELPVFLQ 478


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 416 FGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQCINVFAQ 273
           FGQD N DGV+N    + +        T +  F  +NVF+  + VF Q
Sbjct: 434 FGQDLNQDGVMNINGVLFVFLT---NMTFQNVFAVINVFSGELPVFLQ 478


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 564 HVSPSHCRPCLHPEIAWQMQPRHTSVTGGSSENIGETD 677
           H SP H    +HP  A  + P    V GG+  ++G+ D
Sbjct: 40  HHSP-HLNHAMHPYHANHVNPTANHVMGGAVPDVGKRD 76


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 610 PGKCSRDTLPSQGGVPKTSAKQTPATNSNAQNLITAEAIASEIHQP 747
           P   S  T  S  G+   +A   PAT S+      A   ++ +H P
Sbjct: 13  PAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIP 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,565
Number of Sequences: 336
Number of extensions: 4588
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)