Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0329
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...    32   0.10 
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...    32   0.10 
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    29   0.94 
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   2.9  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   5.0  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    26   5.0  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    26   6.6  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.8  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   8.8  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 297 VKHVYIVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLD--GLRGAVRVYSA 470
           VK   + KR F+        +  H+ + + +  ++ +    F+VV+D  G+R A R    
Sbjct: 86  VKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQR 145

Query: 471 ARVG 482
            RVG
Sbjct: 146 GRVG 149


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 297 VKHVYIVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLD--GLRGAVRVYSA 470
           VK   + KR F+        +  H+ + + +  ++ +    F+VV+D  G+R A R    
Sbjct: 86  VKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQR 145

Query: 471 ARVG 482
            RVG
Sbjct: 146 GRVG 149


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 312 IVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLDG---LRGAVRVYSAARVG 482
           I +R  AG  + SLL   + VI V+H ++V      F  VL G   + G V +  + R G
Sbjct: 252 IKQRLKAGRVIRSLLATTNYVIVVEHDLSVLDYLSDFVCVLYGVPSMYGVVTLPYSVREG 311

Query: 483 I 485
           I
Sbjct: 312 I 312


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 386 VNCYDYMAIHKKGGYGCTGELP 321
           +N  DY+ ++  GGYGC+ + P
Sbjct: 105 LNPSDYVIVYIPGGYGCSFDFP 126


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 567 VSPSHCRPCLHPEIAWQMQPRHT 635
           VS  HC  C H E  W    R+T
Sbjct: 204 VSLKHCEDCFHWEAVWSSITRNT 226


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 628 DTLPSQGGVPKTSAKQTPATNSNAQNLITAEAIAS 732
           DT+P    + ++   Q P +N +A   + A A+A+
Sbjct: 248 DTIPPGASMARSDPSQVPESNPSAAAAVAAAAVAA 282


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 638 RHRGEFRKHRRNRLRQP 688
           +  G+  KHR+NRLR+P
Sbjct: 91  KDEGKLGKHRKNRLRRP 107


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 573 PSHC-RPCLHPEIAWQMQPRHTSVT-GGSSENIGETDS 680
           PSH  R  LHP ++ Q QP   S + G + +NI +  S
Sbjct: 54  PSHLPRSTLHPLLSQQQQPAQQSPSLGPAQQNIQQPPS 91


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 369 VVIAVDHSVAVAVLAKSFHVVLDGLRGAVRVYSAARVG 482
           +VI  DH + V VLAK+   +++    A   Y A R+G
Sbjct: 279 LVIISDHFM-VPVLAKAIRTIIEAPEDASATYFAIRLG 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,325,583
Number of Sequences: 5004
Number of extensions: 72438
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)