Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0329
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 30 1.7
02_03_0262 + 17015383-17015619,17017932-17018879 30 1.7
11_02_0093 - 8238947-8239615 30 2.3
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 30 2.3
11_03_0140 - 10637818-10638059,10638189-10638461,10639963-106404... 29 4.0
04_03_1043 - 21957041-21957256,21957347-21957517,21957979-219580... 29 4.0
05_04_0029 - 17321378-17321905,17323348-17323525,17323531-173239... 29 5.2
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972... 28 6.9
09_02_0317 + 7186148-7186243,7186406-7186572,7186766-7186878,718... 28 6.9
01_01_0662 - 5052390-5053022,5053182-5053319,5053429-5053656,505... 28 6.9
02_04_0556 - 23848751-23849158,23850615-23850797,23853644-238539... 28 9.2
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 540 PHVMRKRPHVSPSHCRPCLHPEIAWQMQPRHTSVTGGSSENIGETDSGNQQ 692
PH R R SP+H RP LH + +P T V + + GE +G +
Sbjct: 412 PHTPRPRSPHSPTHPRPRLHHPLP---RPTRTGVANVTDDRRGEECNGGSR 459
>02_03_0262 + 17015383-17015619,17017932-17018879
Length = 394
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +1
Query: 655 PKTSAKQTPATNSNAQNLITAEAIASEI 738
PK+S+K+TPA S+AQN A A A+ +
Sbjct: 229 PKSSSKRTPAGESSAQNNSIAAAAAAAV 256
>11_02_0093 - 8238947-8239615
Length = 222
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 219 YHCFMVIRHSFHQHQYYFYDESVTIHLEL 133
Y CF IRH Q++ D+ TIH ++
Sbjct: 132 YRCFTFIRHDVLARQWFCTDDEFTIHCDV 160
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 261 LRSVLREDIDALVKHVYIVKR-KFAGAPVASLLVDRHVVIAVDHS 392
L +L+ I+ + KHV ++ R K G P + LL H +++ H+
Sbjct: 244 LELLLQSGIELMGKHVTVIGRSKVVGLPTSLLLQRHHATVSIIHA 288
>11_03_0140 -
10637818-10638059,10638189-10638461,10639963-10640473,
10640556-10640768,10642717-10642784,10642893-10642958,
10644862-10644961
Length = 490
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 580 TADLACIQR*PGKCSRDTLPSQGGVPKTSAKQTPATNSN 696
TA LA P + TLP+QGG +SA + P+T+SN
Sbjct: 86 TASLASRMTEPVNTTPTTLPTQGG---SSAAENPSTSSN 121
>04_03_1043 -
21957041-21957256,21957347-21957517,21957979-21958019,
21958465-21958525,21959191-21960075
Length = 457
Score = 29.1 bits (62), Expect = 4.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 559 LFRITWGYWADAGKPTIMVSHL 494
LF++ WG+W D K TI+++ +
Sbjct: 436 LFQLMWGFWKDLKKATIILTKI 457
>05_04_0029 -
17321378-17321905,17323348-17323525,17323531-17323910,
17323936-17324052
Length = 400
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -1
Query: 389 VVNCYDYMAIH-KKGGYGCTGELPFNYVNVFNQCINVFAQYRS 264
+V C Y+ I+ +GG GC + V C+NV Y S
Sbjct: 350 LVPCLSYLKIYMSRGGVGCFERTMIVGILVIGVCVNVVGTYTS 392
>11_04_0454 -
17895935-17896093,17896878-17896911,17897114-17897252,
17897487-17897561,17897666-17897945
Length = 228
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 638 RHRGEFRKHRRNRLRQPTATHKT*SQPKPLRRKYT 742
R R ++HRR R QP + S PK L ++ T
Sbjct: 27 RRRRHHQRHRRRRGGQPAPNRRGTSSPKTLEKRRT 61
>09_02_0317 +
7186148-7186243,7186406-7186572,7186766-7186878,
7187059-7187133,7187215-7187328,7187545-7187612,
7187690-7187773,7187966-7188019,7188104-7188184,
7188279-7188372,7188501-7188574,7188656-7188766,
7188976-7189032,7189119-7189223,7189584-7189687,
7190021-7190186,7190279-7190416
Length = 566
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 476 SSCTVDPYCAAQTVQNYMKRFGQ 408
S+ T+DP CA VQ + FGQ
Sbjct: 43 STTTIDPTCANMVVQEFPNTFGQ 65
>01_01_0662 -
5052390-5053022,5053182-5053319,5053429-5053656,
5053736-5054035,5054568-5054636
Length = 455
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 515 HHHGLSPDAPDAYSSCTVDPYCAA 444
HH S DA D SS DP+ AA
Sbjct: 68 HHRSASSDASDDASSAAADPFTAA 91
>02_04_0556 -
23848751-23849158,23850615-23850797,23853644-23853908,
23854019-23854059
Length = 298
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 381 VDHSVAVAVLAKSFHVVL---DGLRGAVRVYSAARVGIRSVR*ETMMVGFPAS 530
+ H++A + + VVL DG RG + G+RSVR + V PAS
Sbjct: 32 IGHALAARLAEQGLAVVLTARDGARGEAAAAALRARGLRSVRFRRLDVSDPAS 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,125,983
Number of Sequences: 37544
Number of extensions: 511965
Number of successful extensions: 1456
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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