Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0329
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08) 31 1.0
SB_21926| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_11718| Best HMM Match : NHL (HMM E-Value=1.5e-12) 28 7.1
SB_41022| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_58033| Best HMM Match : HSA (HMM E-Value=3.2) 28 9.4
SB_20714| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 28 9.4
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 9.4
>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
Length = 865
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 282 LRAVPILNSLSNQKPDQITVTYHCFMVIRHSFHQHQYYFYDESVTIHL 139
L+ + L L++ PD YHC + RH FH++ ES+ ++L
Sbjct: 706 LKELEFLKKLNDADPDD---KYHCLRLYRHFFHKNHLCLVFESLHMNL 750
>SB_21926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = -2
Query: 502 SHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATGAPANF 323
+HL + P + + A R + + KD+++TAT S AMTT+ + P
Sbjct: 2 THLIVITPAESLIDAIMATARHADRSVKDISQTATTLVRSVAMTTYLLKQNHQFATPNRS 61
Query: 322 LLTM*TCLTSASMSSRSTDLK 260
L+ +C S+ + SR K
Sbjct: 62 LM---SCTESSPILSRQRRTK 79
>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 428 YMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVF 300
++K G + +GDG ++ + +AI GY +L N ++VF
Sbjct: 923 FVKEIGSEGSGDGQLSFPESVAIMPNSGYIVVSDLSNNRIHVF 965
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 225 VTYHCFMVIRHSFHQHQYYFYDESVTIHLELE*TCSYKSIFI 100
V YH RH ++++Y+ DE V +++L T ++++ I
Sbjct: 654 VVYHGSASSRHLIQEYEFYYRDEHVADNMQLS-TVPWRAVII 694
>SB_11718| Best HMM Match : NHL (HMM E-Value=1.5e-12)
Length = 85
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 431 NYMKRFGQDCNGDGVVNCYDYMAIHKKG 348
N++ FG NG G NC ++AI+ KG
Sbjct: 50 NHVTSFGSLGNGRGQFNCPSHVAINSKG 77
>SB_41022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 27.9 bits (59), Expect = 9.4
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Frame = +1
Query: 433 WTVCAAQYGST-VQLE*ASGASG--ERP*WWVFRHQPSSPM*CGRGRTSHPRTADLACIQ 603
WTVC+A GS+ VQ SG E P V PS C R + P T
Sbjct: 284 WTVCSASCGSSGVQSRNQFCPSGKCEPP---VPDPPPSETRECNRNPCNPPTTLGTDHTT 340
Query: 604 R*PGKCSRDTLPSQGGVPKTSAKQTPATNSNA-QNLITAEAIASE 735
+R +P+ P+TS +TP + +NA + + EA A+E
Sbjct: 341 PSNTTGNRTKVPT---TPRTSEGETPTSLANAPSKMSSTEARATE 382
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +1
Query: 574 PRTADLACIQR*PGKCSRDTLPSQGGVPKT-SAKQTPATNS 693
PRT C PG S + PS P T S TP+T S
Sbjct: 419 PRTPSTPCTHSTPGTPSTPSTPSTPSTPSTPSLTHTPSTPS 459
>SB_58033| Best HMM Match : HSA (HMM E-Value=3.2)
Length = 249
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 392 GVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQCINVFAQYRS 264
G NC +A+ K GG +G L + ++ F + V YRS
Sbjct: 23 GDFNCVSNLALDKWGGSALSGTLGYPALHTFLERFRVLDLYRS 65
>SB_20714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/56 (35%), Positives = 24/56 (42%)
Frame = +1
Query: 379 QLTTPSPLQSWPNLFM*FWTVCAAQYGSTVQLE*ASGASGERP*WWVFRHQPSSPM 546
Q T PLQ N M FWT C + G + + S GE P R SSP+
Sbjct: 352 QWQTNCPLQ---NCTMQFWTNCICRRGVIYKEDCVSNGKGEEPGGRQERRGGSSPL 404
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/77 (28%), Positives = 31/77 (40%)
Frame = -2
Query: 493 TLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATGAPANFLLT 314
T+ T AA T AP + T E + A+ T + E T APA L T
Sbjct: 48 TMAPETTAAPVTTMAPETTAAPATTTALETTMVPETTAALET--TVASETTDAPATTLAT 105
Query: 313 M*TCLTSASMSSRSTDL 263
T +++ +TDL
Sbjct: 106 ETTAAPETTVAPETTDL 122
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/77 (28%), Positives = 31/77 (40%)
Frame = -2
Query: 493 TLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATGAPANFLLT 314
T+ T AA T AP + T E + A+ T + E T APA L T
Sbjct: 1123 TMAPETTAAPVTTMAPETTAAPATTTALETTMVPETTAALET--TVASETTDAPATTLAT 1180
Query: 313 M*TCLTSASMSSRSTDL 263
T +++ +TDL
Sbjct: 1181 ETTAAPETTVAPETTDL 1197
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/77 (28%), Positives = 31/77 (40%)
Frame = -2
Query: 493 TLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATGAPANFLLT 314
T+ T AA T AP + T E + A+ T + E T APA L T
Sbjct: 2375 TMAPETTAAPVTTMAPETTAAPATTTALETTMVPETTAALET--TVASETTDAPATTLAT 2432
Query: 313 M*TCLTSASMSSRSTDL 263
T +++ +TDL
Sbjct: 2433 ETTAAPETTVAPETTDL 2449
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,510,609
Number of Sequences: 59808
Number of extensions: 589876
Number of successful extensions: 2187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2187
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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