Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0329
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41547-6|AAA83197.1| 139|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AF067611-4|AAC19181.1| 139|Caenorhabditis elegans Hypothetical ... 40 0.003
AF067611-3|AAC19179.1| 139|Caenorhabditis elegans Hypothetical ... 40 0.003
AF067611-5|AAC19180.1| 145|Caenorhabditis elegans Hypothetical ... 32 0.38
U58747-4|AAF99902.2| 159|Caenorhabditis elegans Hypothetical pr... 30 2.0
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 29 2.7
U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal prote... 29 2.7
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z81063-5|CAB02956.1| 242|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical pr... 29 4.7
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 4.7
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 4.7
AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger p... 29 4.7
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z83237-2|CAB05789.1| 258|Caenorhabditis elegans Hypothetical pr... 28 8.2
AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical ... 28 8.2
>U41547-6|AAA83197.1| 139|Caenorhabditis elegans Hypothetical
protein F22A3.6a protein.
Length = 139
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/64 (32%), Positives = 25/64 (39%)
Frame = -1
Query: 482 AYSSCTVDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNV 303
A+ C D CA V+NY R+ CNG G+ C H G GC Y N
Sbjct: 72 AWKRCADDLNCATTCVENYYNRYKSQCNGLGMGACQIMSRNHNGGPRGCHNANTLAYWNG 131
Query: 302 FNQC 291
C
Sbjct: 132 VKSC 135
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = -2
Query: 643 VTEVCLGCICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKPT 512
V+ CL CIC SGCK + C + +CG ++I GY+ D G+PT
Sbjct: 16 VSADCLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIGYYEDCGQPT 62
>AF067611-4|AAC19181.1| 139|Caenorhabditis elegans Hypothetical
protein C45G7.2 protein.
Length = 139
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/73 (30%), Positives = 28/73 (38%)
Frame = -1
Query: 509 HGLSPDAPDAYSSCTVDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTG 330
HG S + A+ C D CA V+NY R+ +C G G C H G GC
Sbjct: 65 HGESTEV--AWKRCADDLKCATNCVENYYNRYKHECAGTGQGACEVMARNHNGGPRGCHA 122
Query: 329 ELPFNYVNVFNQC 291
Y + C
Sbjct: 123 SGTLGYWKGVHSC 135
Score = 35.1 bits (77), Expect = 0.054
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = -2
Query: 631 CLGCICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKP 515
CL CIC SGCK + C + +CG ++I Y+ D G+P
Sbjct: 20 CLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIPYYEDCGQP 61
>AF067611-3|AAC19179.1| 139|Caenorhabditis elegans Hypothetical
protein C45G7.3 protein.
Length = 139
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = -1
Query: 482 AYSSCTVDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNV 303
A+ C D CA V+NY R+ C G G C H G GC Y N
Sbjct: 72 AWKRCANDLSCATTCVENYYNRYKSQCAGTGQGACEVMARNHNGGPQGCKHSGTLGYWNG 131
Query: 302 FNQC 291
C
Sbjct: 132 IKSC 135
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -2
Query: 631 CLGCICQAISGCKQ---GLQCEGETCGLFRITWGYWADAGKPT 512
CL CIC SGCK + +CG ++I Y+ D G+PT
Sbjct: 20 CLHCICMRESGCKPIGCNMDVGSLSCGYYQIKLPYYEDCGQPT 62
>AF067611-5|AAC19180.1| 145|Caenorhabditis elegans Hypothetical
protein C45G7.1 protein.
Length = 145
Score = 32.3 bits (70), Expect = 0.38
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 482 AYSSCTVDPYCAAQTVQNYMKRFGQDCNGDGVVNC 378
A+ C D CA + NY R+ CNG G+ C
Sbjct: 54 AWKRCADDLDCAETCMMNYYHRYKSQCNGLGMSEC 88
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -1
Query: 452 CAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 291
C A + QNY R+ C+G G+ C + H G GC Y +C
Sbjct: 88 CEA-SFQNYYHRYKSQCDGLGMGECEVFARNHNGGPTGCRNPGTLEYWQSIQKC 140
>U58747-4|AAF99902.2| 159|Caenorhabditis elegans Hypothetical
protein C55F2.2 protein.
Length = 159
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -1
Query: 485 DAYSSCTVDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGC 336
+A+ +C D C+A ++ +F C G C IH G GC
Sbjct: 83 EAWMNCAQDYQCSASCIRTLATKFRVKCYGKS--ECETIARIHDGGANGC 130
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/83 (30%), Positives = 34/83 (40%)
Frame = -2
Query: 517 PTIMVSHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATG 338
P + + +PT + T P PSKTT T T TA TT ST T
Sbjct: 365 PLTTTTEVISDVPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQ 422
Query: 337 APANFLLTM*TCLTSASMSSRST 269
P T T+AS ++++T
Sbjct: 423 KPTTVTSTTTLPSTTASTTTKTT 445
>U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.2 protein.
Length = 196
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 297 VKHVYIVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLD--GLRGAVRVYSA 470
VK + K F+ V H+ + + + ++ + F+VVLD G R A R +
Sbjct: 96 VKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDFYVVLDRAGRRIAKRRRAP 155
Query: 471 ARVG 482
RVG
Sbjct: 156 GRVG 159
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/72 (33%), Positives = 31/72 (43%)
Frame = -2
Query: 484 MPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATGAPANFLLTM*T 305
+PT + T P PSKTT T T TA TT ST T P T
Sbjct: 495 VPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQKPTTVTSTTTL 552
Query: 304 CLTSASMSSRST 269
T+AS ++++T
Sbjct: 553 PSTTASTTTKTT 564
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/72 (33%), Positives = 31/72 (43%)
Frame = -2
Query: 484 MPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATGAPANFLLTM*T 305
+PT + T P PSKTT T T TA TT ST T P T
Sbjct: 336 VPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQKPTTVTSTTTL 393
Query: 304 CLTSASMSSRST 269
T+AS ++++T
Sbjct: 394 PSTTASTTTKTT 405
>Z81063-5|CAB02956.1| 242|Caenorhabditis elegans Hypothetical
protein F15D3.7 protein.
Length = 242
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 453 VRVYSAARVGIRSVR*ETMMVGFPASAQ*PHVMRKRPH 566
V +YSA +G+RSVR E + GF A A + R PH
Sbjct: 169 VFMYSALEIGLRSVRAEDELNGFGAGALTGAIYRS-PH 205
>Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical
protein F58E6.1b protein.
Length = 764
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 282 LRAVPILNSLSNQKPDQITVTYHCFMVIRHSFHQH 178
LR +NS SN + + CF+ IRH +++H
Sbjct: 668 LRTFTFINSKSNNFCSENRINSVCFLEIRHHWYEH 702
>Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical
protein F58E6.1a protein.
Length = 966
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 282 LRAVPILNSLSNQKPDQITVTYHCFMVIRHSFHQH 178
LR +NS SN + + CF+ IRH +++H
Sbjct: 668 LRTFTFINSKSNNFCSENRINSVCFLEIRHHWYEH 702
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = -2
Query: 649 PPVTEVCLGCICQAISGCKQGLQCEGETCGLFRITWGYWADAGKPTIMVSHLTLRMPTLA 470
P EV G C A + C +G CE GL R GY A +G + T +M +A
Sbjct: 829 PRKLEVVPGASCNANTVCTKGSTCES---GLCRCQPGYIAVSGNCVALPMSTTPKMRVIA 885
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = -2
Query: 649 PPVTEVCLGCICQAISGCKQGLQCEGETCGLFRITWGYWADAGKPTIMVSHLTLRMPTLA 470
P EV G C A + C +G CE GL R GY A +G + T +M +A
Sbjct: 926 PRKLEVVPGASCNANTVCTKGSTCES---GLCRCQPGYIAVSGNCVALPMSTTPKMRVIA 982
>AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger
protein STAT-B protein.
Length = 810
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 282 LRAVPILNSLSNQKPDQITVTYHCFMVIRHSFHQH 178
LR +NS SN + + CF+ IRH +++H
Sbjct: 714 LRTFTFINSKSNNFCSENRINSVCFLEIRHHWYEH 748
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 682 PESVSPMFSELPPVTEVC 629
P SP FS LPP +E+C
Sbjct: 1131 PSETSPPFSSLPPESEIC 1148
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 682 PESVSPMFSELPPVTEVC 629
P SP FS LPP +E+C
Sbjct: 1131 PSETSPPFSSLPPESEIC 1148
>Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical
protein C14B1.5 protein.
Length = 396
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = -1
Query: 479 YSSCTVDPYCAAQTVQNYMKRFGQDC-----NGDGVVNCYDYMAIH 357
Y +C VD Y A + + +G C N DG+ Y ++ IH
Sbjct: 86 YGACCVDDYTAKSMGCDLLVHYGHSCLVPIQNTDGIAMLYVFVNIH 131
>Z83237-2|CAB05789.1| 258|Caenorhabditis elegans Hypothetical
protein R06B9.2 protein.
Length = 258
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 460 TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATGAPANF 323
T+T + S+T + TATA TA+ WR T + A P +
Sbjct: 57 TKTNSKGESETKTHTVHYTATAKHLDTAVPLWRKTDKAARLLPGKY 102
>AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical
protein C54G6.2 protein.
Length = 700
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 617 NAAETHFRHRGEFRKHRRNRLRQPTATHKT 706
N A TH+R R HR + RQP ++ T
Sbjct: 77 NTAPTHYRRRSSTEAHRYHPPRQPRSSAPT 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,863,772
Number of Sequences: 27780
Number of extensions: 435553
Number of successful extensions: 1101
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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