Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0329
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58227.1 68414.m06616 hypothetical protein                          30   1.4  
At5g10040.1 68418.m01163 expressed protein                             29   4.4  
At4g19560.1 68417.m02876 cyclin family protein similar to SP|O88...    29   4.4  

>At1g58227.1 68414.m06616 hypothetical protein
          Length = 1323

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 398 GDGVVNCYDYMAIHKKGGYGCTGELPFNYV--NVFNQCINV 282
           GDG +  + +M+ + KG +   G+   +YV  N+  QC+NV
Sbjct: 486 GDGKMGIFSFMSKNGKGCFAALGKDGLSYVSLNLKRQCVNV 526


>At5g10040.1 68418.m01163 expressed protein 
          Length = 87

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +2

Query: 44  FFLLNYISNLYFEYTKNRLMKM 109
           FFLLNY+S+LY++   N ++++
Sbjct: 66  FFLLNYVSSLYYKSRLNLMLEI 87


>At4g19560.1 68417.m02876 cyclin family protein similar to SP|O88874
           Cyclin K (Fragment) {Mus musculus}; contains Pfam
           profile PF00134: Cyclin, N-terminal domain
          Length = 474

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 630 HTSVTGGSSENIGETDSGNQQQRTKPDHSRSHCVGNTPTKK 752
           H+   G  SE IGE +S ++ Q+   DHS    VGN   +K
Sbjct: 331 HSVHDGSRSEGIGEVNSESEAQKNLQDHS----VGNIMVEK 367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,583,691
Number of Sequences: 28952
Number of extensions: 392951
Number of successful extensions: 997
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)